We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RABAC1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RABAC1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:213.5 nTPM
HPA Brain:184.4 nTPM
GTEx:213.5 nTPM
FANTOM5:78.8 Scaled Tags Per Million
Pig:223.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 167.4
1981 Female, age 72, midline 204.9
2565 Male, age 75, midline 203.3
2194 Female, age 79, both hemispheres 176.3
2816 Male, age 47, midline 144.9
2048 Male, age 55, midline 107.7
Cervical spinal cord, dorsal horn
nTPM: 165.5
2173 Female, age 72, unknown 232.2
2296 Male, age 66, both hemispheres 207.9
2069 Male, age 47, both hemispheres 174.5
1877 Male, age 55, unknown 142.8
2297 Male, age 75, both hemispheres 131.2
2721 Male, age 90, both hemispheres 104.4
Cervical spinal cord, ventral horn
nTPM: 184.4
2809 Male, age 90, both hemispheres 201.3
2098 Female, age 72, unknown 198.6
2480 Male, age 75, both hemispheres 193.6
2068 Male, age 55, unknown 185.4
2820 Female, age 79, both hemispheres 169.0
2295 Male, age 66, both hemispheres 158.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

213.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 213.5
Samples: 204

Max nTPM: 377.5
Min nTPM: 122.9
Std nTPM: 46.4
Median nTPM: 208.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 377.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 356.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 342.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 335.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 328.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 327.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 324.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 312.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 310.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 303.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 303.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 302.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 294.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 284.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 279.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 278.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 278.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 276.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 275.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 272.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 272.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 271.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 269.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 268.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 267.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 266.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 265.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 263.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 262.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 261.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 260.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 260.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 259.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 257.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 257.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 256.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 256.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 253.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 251.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 248.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 247.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 247.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 245.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 244.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 243.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 242.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 240.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 239.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 238.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 237.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 237.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 236.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 236.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 235.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 235.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 235.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 234.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 234.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 234.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 233.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 232.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 231.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 230.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 230.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 228.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 228.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 226.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 226.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 225.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 225.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 225.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 224.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 223.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 223.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 223.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 222.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 221.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 221.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 221.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 220.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 219.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 219.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 218.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 218.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 217.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 217.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 217.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 216.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 216.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 215.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 215.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 214.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 212.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 212.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 211.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 211.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 211.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 210.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 210.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 210.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 209.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 209.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 208.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 208.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 207.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 207.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 207.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 207.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 206.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 206.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 206.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 206.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 206.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 205.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 205.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 204.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 204.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 203.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 203.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 202.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 202.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 200.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 198.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 198.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 196.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 196.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 196.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 195.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 194.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 194.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 193.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 192.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 191.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 191.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 190.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 190.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 189.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 189.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 189.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 188.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 188.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 188.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 188.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 187.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 186.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 185.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 185.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 185.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 185.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 182.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 182.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 182.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 181.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 181.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 181.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 181.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 180.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 180.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 179.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 178.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 177.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 177.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 175.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 175.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 174.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 174.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 172.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 171.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 171.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 171.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 169.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 169.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 169.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 169.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 168.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 168.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 166.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 165.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 164.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 163.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 161.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 159.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 158.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 157.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 156.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 155.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 155.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 154.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 154.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 150.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 149.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 147.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 146.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 146.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 144.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 143.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 141.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 133.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 132.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 131.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 127.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 126.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 124.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 122.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

78.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 78.8
FF:10181-103D1 60 years, female 94.5
FF:10159-103A6 76 years, female 63.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

223.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 223.5
Samples: 4

Max nTPM: 280.1
Min nTPM: 203.7
Sample A Female 205.4
Sample B Female 204.6
Sample C Male 280.1
Sample D Male 203.7
Ventral spinal cord
nTPM: 223.6
Samples: 4

Max nTPM: 234.2
Min nTPM: 197.9
Sample A Female 197.9
Sample B Female 233.3
Sample C Male 234.2
Sample D Male 229.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo