MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:234.0 nTPM
HPA Brain:180.8 nTPM
GTEx:234.0 nTPM
FANTOM5:94.8 Scaled Tags Per Million
Pig:205.2 nTPM
Mouse:105.6 nTPM
Allen mouse:10.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 180.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 154.6
2586 Male, age 75, left hemisphere 178.9
2411 Female, age 72, unknown 175.2
2019 Male, age 18, unknown 172.3
1827 Male, age 72, unknown 171.5
2666 Male, age 74, left hemisphere 167.5
2828 Female, age 72, unknown 161.1
1870 Female, age 42, unknown 136.9
2219 Male, age 76, both hemispheres 129.9
1833 Male, age 53, unknown 127.2
1830 Male, age 51, unknown 125.7
Dorsal raphe nucleus
nTPM: 167.8
2298 Female, age 72, unknown 224.0
2047 Male, age 72, unknown 177.2
2750 Male, age 76, both hemispheres 164.4
1828 Male, age 53, unknown 153.7
2016 Female, age 72, unknown 119.7
Inferior colliculus
nTPM: 127.1
2097 Female, age 72, unknown 151.8
1890 Male, age 53, unknown 127.7
1848 Female, age 42, unknown 123.2
2849 Male, age 72, unknown 105.6
Median raphe nucleus
nTPM: 180.8
2220 Male, age 76, midline 180.8
Periaquaductal grey, anterior
nTPM: 166.5
1795 Male, age 51, unknown 189.8
2502 Female, age 75, unknown 156.5
1947 Male, age 18, unknown 153.2
Periaquaductal grey, dorsal
nTPM: 114.9
1831 Male, age 72, unknown 126.4
1840 Male, age 53, unknown 124.7
2464 Female, age 72, unknown 113.6
2850 Male, age 76, both hemispheres 95.1
Periaquaductal grey, lateral
nTPM: 121.8
2053 Male, age 18, unknown 136.4
2272 Male, age 74, both hemispheres 129.5
2140 Male, age 76, both hemispheres 99.3
Pretectal area
nTPM: 172.7
1816 Male, age 51, unknown 236.2
2007 Male, age 72, unknown 229.9
1944 Female, age 72, unknown 224.9
1817 Female, age 42, unknown 204.4
1815 Male, age 53, unknown 176.3
2224 Female, age 72, unknown 161.5
2667 Female, age 75, unknown 153.5
2273 Male, age 74, both hemispheres 149.7
2825 Male, age 18, unknown 129.5
2316 Male, age 76, right hemisphere 118.1
2407 Male, age 75, both hemispheres 115.5
Red nucleus
nTPM: 142.4
2785 Male, age 18, unknown 167.4
2503 Female, age 72, unknown 162.0
1821 Female, age 72, unknown 161.3
2584 Male, age 75, left hemisphere 143.3
2588 Male, age 74, left hemisphere 139.5
2769 Male, age 72, unknown 137.6
2227 Male, age 72, unknown 137.4
2725 Female, age 75, unknown 137.2
1954 Female, age 42, unknown 136.8
1904 Male, age 53, unknown 135.6
1865 Male, age 51, unknown 127.8
2823 Male, age 76, right hemisphere 122.6
Substantia nigra
nTPM: 164.8
1916 Female, age 42, unknown 230.4
1851 Male, age 51, unknown 192.4
1941 Male, age 53, unknown 191.2
1889 Female, age 72, unknown 186.9
2665 Male, age 74, both hemispheres 168.2
2583 Male, age 75, right hemisphere 157.2
2590 Female, age 75, unknown 144.7
2699 Male, age 18, unknown 127.5
2241 Male, age 72, unknown 127.0
2409 Female, age 72, unknown 122.6
Superior colliculus
nTPM: 156.1
2668 Female, age 75, unknown 204.5
2087 Female, age 72, unknown 186.6
2261 Male, age 18, unknown 181.3
1796 Male, age 53, unknown 168.7
1913 Female, age 42, unknown 155.8
2587 Male, age 74, left hemisphere 150.5
2664 Male, age 75, both hemispheres 139.4
1995 Male, age 72, unknown 135.2
1839 Male, age 51, unknown 119.5
1895 Male, age 76, right hemisphere 119.4
Ventral tegmental area
nTPM: 160.8
2410 Female, age 72, unknown 199.7
1915 Female, age 42, unknown 186.2
2218 Male, age 76, both hemispheres 156.9
1942 Male, age 51, unknown 143.4
2021 Male, age 53, unknown 141.6
2223 Female, age 72, unknown 137.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 234.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 234.0
Samples: 183

Max nTPM: 432.6
Min nTPM: 87.9
Std nTPM: 55.2
Median nTPM: 229.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 432.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 391.0
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 372.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 367.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 352.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 340.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 337.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 335.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 334.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 328.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 327.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 94.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.8
FF:10158-103A5 76 years, female 94.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 205.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 205.1
Samples: 4

Max nTPM: 275.4
Min nTPM: 143.7
Sample A Female 275.4
Sample B Female 189.9
Sample C Male 211.3
Sample D Male 143.7
Midbrain
nTPM: 202.0
Samples: 4

Max nTPM: 279.1
Min nTPM: 163.6
Sample A Female 279.1
Sample B Female 194.5
Sample C Male 170.8
Sample D Male 163.6
Periaqueductal gray
nTPM: 169.9
Samples: 3

Max nTPM: 199.1
Min nTPM: 154.9
Sample B Female 154.9
Sample C Male 199.1
Sample D Male 155.6
Superior colliculi
nTPM: 205.2
Samples: 4

Max nTPM: 257.4
Min nTPM: 159.7
Sample A Female 257.4
Sample B Female 218.3
Sample C Male 185.3
Sample D Male 159.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 105.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 105.6
Samples: 4

Max nTPM: 120.5
Min nTPM: 92.4
Sample A Male 120.5
Sample B Male 100.9
Sample C Female 92.4
Sample D Female 108.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
75750398 Antisense, RP_060518_04_G08, Mouse strain C57BL/6J (56 days, male) 10.7

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