BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:112.9 nTPM
HPA Brain:87.7 nTPM
GTEx:112.9 nTPM
FANTOM5:32.3 Scaled Tags Per Million
Macaque:54.0 nTPM
Mouse:24.2 nTPM
Rat:10.7 nTPM
Pig:68.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 87.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.2
2586 Male, age 75, left hemisphere 100.2
1827 Male, age 72, unknown 84.4
2828 Female, age 72, unknown 79.2
2411 Female, age 72, unknown 75.6
1870 Female, age 42, unknown 73.3
2019 Male, age 18, unknown 72.6
1833 Male, age 53, unknown 71.5
2666 Male, age 74, left hemisphere 71.0
1830 Male, age 51, unknown 63.3
2219 Male, age 76, both hemispheres 60.7
Dorsal raphe nucleus
nTPM: 85.9
2298 Female, age 72, unknown 100.9
2047 Male, age 72, unknown 97.6
2750 Male, age 76, both hemispheres 81.7
1828 Male, age 53, unknown 78.5
2016 Female, age 72, unknown 71.1
Inferior colliculus
nTPM: 69.2
2097 Female, age 72, unknown 80.6
1890 Male, age 53, unknown 70.4
1848 Female, age 42, unknown 64.2
2849 Male, age 72, unknown 61.6
Median raphe nucleus
nTPM: 86.1
2220 Male, age 76, midline 86.1
Periaquaductal grey, anterior
nTPM: 87.7
1947 Male, age 18, unknown 101.2
1795 Male, age 51, unknown 86.1
2502 Female, age 75, unknown 75.7
Periaquaductal grey, dorsal
nTPM: 65.2
2850 Male, age 76, both hemispheres 72.4
1840 Male, age 53, unknown 65.6
1831 Male, age 72, unknown 64.0
2464 Female, age 72, unknown 59.0
Periaquaductal grey, lateral
nTPM: 75.8
2272 Male, age 74, both hemispheres 85.1
2053 Male, age 18, unknown 74.8
2140 Male, age 76, both hemispheres 67.4
Pretectal area
nTPM: 81.7
1816 Male, age 51, unknown 96.2
2273 Male, age 74, both hemispheres 91.3
1817 Female, age 42, unknown 91.0
2007 Male, age 72, unknown 90.6
1815 Male, age 53, unknown 84.9
2667 Female, age 75, unknown 84.0
1944 Female, age 72, unknown 81.9
2224 Female, age 72, unknown 80.4
2407 Male, age 75, both hemispheres 71.0
2825 Male, age 18, unknown 66.7
2316 Male, age 76, right hemisphere 60.8
Red nucleus
nTPM: 62.9
2584 Male, age 75, left hemisphere 77.4
2725 Female, age 75, unknown 74.2
2785 Male, age 18, unknown 67.0
1821 Female, age 72, unknown 63.8
2823 Male, age 76, right hemisphere 63.1
2503 Female, age 72, unknown 62.3
2227 Male, age 72, unknown 59.3
2769 Male, age 72, unknown 58.6
1865 Male, age 51, unknown 58.3
1904 Male, age 53, unknown 58.1
2588 Male, age 74, left hemisphere 58.0
1954 Female, age 42, unknown 55.2
Substantia nigra
nTPM: 77.9
1916 Female, age 42, unknown 95.5
1851 Male, age 51, unknown 90.7
1889 Female, age 72, unknown 84.8
2583 Male, age 75, right hemisphere 77.9
1941 Male, age 53, unknown 77.1
2699 Male, age 18, unknown 73.8
2590 Female, age 75, unknown 73.2
2241 Male, age 72, unknown 73.1
2665 Male, age 74, both hemispheres 70.6
2409 Female, age 72, unknown 62.3
Superior colliculus
nTPM: 74.1
1796 Male, age 53, unknown 86.3
1913 Female, age 42, unknown 78.3
2261 Male, age 18, unknown 78.1
2664 Male, age 75, both hemispheres 78.1
2587 Male, age 74, left hemisphere 74.5
2087 Female, age 72, unknown 73.7
2668 Female, age 75, unknown 73.0
1839 Male, age 51, unknown 69.1
1995 Male, age 72, unknown 69.0
1895 Male, age 76, right hemisphere 61.0
Ventral tegmental area
nTPM: 77.6
2410 Female, age 72, unknown 80.6
2218 Male, age 76, both hemispheres 80.5
1915 Female, age 42, unknown 79.0
1942 Male, age 51, unknown 76.1
2021 Male, age 53, unknown 75.0
2223 Female, age 72, unknown 74.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 112.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 112.9
Samples: 183

Max nTPM: 226.4
Min nTPM: 62.9
Std nTPM: 26.6
Median nTPM: 111.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 226.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 206.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 191.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 188.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 179.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 171.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 170.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 167.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 158.7
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 157.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 157.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.3
FF:10158-103A5 76 years, female 32.3

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 54.0
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 54.0
Samples: 1

Max nTPM: 54.0
Min nTPM: 54.0
Sample A 54.0
Midbrain
nTPM: 51.6
Samples: 1

Max nTPM: 51.6
Min nTPM: 51.6
Sample A 51.6
Superior colliculi
nTPM: 48.8
Samples: 1

Max nTPM: 48.8
Min nTPM: 48.8
Sample A 48.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 68.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 63.1
Samples: 3

Max nTPM: 77.3
Min nTPM: 54.1
Sample A Female 77.3
Sample B Female 54.1
Sample C Male 57.8
Midbrain
nTPM: 49.1
Samples: 3

Max nTPM: 55.9
Min nTPM: 42.2
Sample B Female 55.9
Sample C Male 49.2
Sample D Male 42.2
Periaqueductal gray
nTPM: 51.9
Samples: 3

Max nTPM: 55.8
Min nTPM: 48.6
Sample B Female 51.3
Sample C Male 55.8
Sample D Male 48.6
Superior colliculi
nTPM: 68.6
Samples: 4

Max nTPM: 75.0
Min nTPM: 59.4
Sample A Female 72.0
Sample B Female 75.0
Sample C Male 68.0
Sample D Male 59.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.2
Samples: 4

Max nTPM: 26.7
Min nTPM: 21.7
Sample A 24.3
Sample B 26.7
Sample C 21.7
Sample D 23.9

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 10.7
Rat sample Sample description nTPM
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.1
Sample A 11.6
Sample A 11.2
Sample A 10.9
Sample A 9.1

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