We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
WDR83OS
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • WDR83OS
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:161.9 nTPM
HPA Brain:73.7 nTPM
GTEx:161.9 nTPM
FANTOM5:59.9 Scaled Tags Per Million
Pig:52.6 nTPM
Mouse:52.9 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.7
Sample id Sample description nTPM
Amygdala
nTPM: 73.7
2514 Male, age 75, right hemisphere 92.2
2695 Female, age 67, right hemisphere 73.4
2814 Male, age 76, right hemisphere 69.6
1987 Female, age 91, left hemisphere 69.0
2517 Female, age 94, left hemisphere 64.5
Basal amygdala
nTPM: 60.2
2609 Male, age 75, right hemisphere 78.5
2110 Male, age 80, left hemisphere 60.8
1955 Male, age 76, both hemispheres 60.6
2685 Female, age 94, left hemisphere 57.1
2827 Female, age 67, right hemisphere 52.2
2243 Female, age 91, right hemisphere 52.1
Central amygdala
nTPM: 70.1
2826 Female, age 94, left hemisphere 101.2
2515 Male, age 75, right hemisphere 81.8
1905 Male, age 76, both hemispheres 63.5
2239 Male, age 80, left hemisphere 51.9
2701 Female, age 91, right hemisphere 51.9
Corticomedial amygdala
nTPM: 55.3
2428 Male, age 75, right hemisphere 78.3
2829 Male, age 80, left hemisphere 62.8
2242 Female, age 91, right hemisphere 51.7
2240 Male, age 76, both hemispheres 51.0
2429 Female, age 94, left hemisphere 50.9
2535 Female, age 67, right hemisphere 37.0
Lateral amygdala
nTPM: 69.0
2516 Male, age 75, right hemisphere 88.8
2534 Female, age 94, left hemisphere 85.1
2830 Female, age 67, right hemisphere 68.6
1883 Male, age 76, both hemispheres 66.2
2256 Male, age 80, left hemisphere 55.3
2255 Female, age 91, right hemisphere 50.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 161.9
Samples: 181

Max nTPM: 318.8
Min nTPM: 95.0
Std nTPM: 35.8
Median nTPM: 154.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 318.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 284.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 282.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 272.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 268.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 248.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 245.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 231.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 230.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 230.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 230.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 225.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 225.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 221.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 218.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 216.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 216.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 215.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 212.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 208.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 203.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 198.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 198.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 194.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 192.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 192.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 190.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 190.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 190.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 189.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 188.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 186.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 185.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 184.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 183.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 183.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 181.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 180.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 179.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 179.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 178.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 177.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 177.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 177.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 176.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 175.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 175.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 174.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 173.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 173.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 171.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 171.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 170.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 170.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 169.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 169.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 169.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 169.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 168.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 166.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 166.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 166.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 165.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 165.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 164.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 164.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 164.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 164.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 164.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 164.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 163.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 163.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 163.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 162.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 162.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 162.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 161.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 161.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 161.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 160.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 160.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 160.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 159.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 159.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 159.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 158.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 158.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 156.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 156.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 155.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 154.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 154.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 153.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 153.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 153.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 153.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 153.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 152.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 152.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 152.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 151.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 151.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 150.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 149.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 149.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 149.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 148.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 148.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 148.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 147.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 147.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 147.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 147.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 147.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 146.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 146.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 145.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 145.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 145.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 144.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 144.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 143.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 143.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 143.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 143.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 143.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 142.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 141.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 141.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 141.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 140.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 140.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 140.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 140.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 139.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 139.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 139.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 139.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 139.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 138.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 138.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 138.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 138.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 137.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 137.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 136.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 133.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 132.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 132.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 132.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 132.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 131.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 130.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 129.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 129.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 128.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 128.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 127.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 126.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 126.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 125.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 125.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 124.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 123.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 123.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 122.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 122.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 121.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 121.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 121.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 120.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 120.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 117.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 113.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 113.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 113.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 112.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 111.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 104.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 97.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 95.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

59.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 59.9
FF:10151-102I7 76 years, female 59.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.6
Pig sample Sample description nTPM
Amygdala
nTPM: 52.6
Samples: 4

Max nTPM: 63.2
Min nTPM: 45.8
Sample A Female 63.2
Sample B Female 51.5
Sample C Male 50.0
Sample D Male 45.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 53.0
Samples: 4

Max nTPM: 54.4
Min nTPM: 52.4
Sample A Male 52.4
Sample B Male 52.6
Sample C Female 54.4
Sample D Female 52.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
68919057 Antisense, RP_050301_02_D12, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo