MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:167.9 nTPM
HPA Brain:78.2 nTPM
GTEx:167.9 nTPM
FANTOM5:108.4 Scaled Tags Per Million
Pig:87.1 nTPM
Mouse:41.3 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 78.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.8
2411 Female, age 72, unknown 84.6
2019 Male, age 18, unknown 78.6
2586 Male, age 75, left hemisphere 76.3
1870 Female, age 42, unknown 74.8
2666 Male, age 74, left hemisphere 70.7
1833 Male, age 53, unknown 65.9
1830 Male, age 51, unknown 65.7
1827 Male, age 72, unknown 65.1
2828 Female, age 72, unknown 61.4
2219 Male, age 76, both hemispheres 44.8
Dorsal raphe nucleus
nTPM: 78.2
2298 Female, age 72, unknown 95.7
2750 Male, age 76, both hemispheres 77.0
1828 Male, age 53, unknown 75.4
2047 Male, age 72, unknown 74.3
2016 Female, age 72, unknown 68.7
Inferior colliculus
nTPM: 63.3
2097 Female, age 72, unknown 72.8
1848 Female, age 42, unknown 67.9
1890 Male, age 53, unknown 57.7
2849 Male, age 72, unknown 54.6
Median raphe nucleus
nTPM: 70.0
2220 Male, age 76, midline 70.0
Periaquaductal grey, anterior
nTPM: 62.3
2502 Female, age 75, unknown 71.2
1795 Male, age 51, unknown 58.9
1947 Male, age 18, unknown 56.8
Periaquaductal grey, dorsal
nTPM: 59.7
2464 Female, age 72, unknown 63.5
1840 Male, age 53, unknown 62.2
2850 Male, age 76, both hemispheres 57.4
1831 Male, age 72, unknown 55.6
Periaquaductal grey, lateral
nTPM: 55.0
2053 Male, age 18, unknown 58.2
2140 Male, age 76, both hemispheres 56.5
2272 Male, age 74, both hemispheres 50.1
Pretectal area
nTPM: 64.8
2007 Male, age 72, unknown 76.0
1817 Female, age 42, unknown 73.7
2224 Female, age 72, unknown 71.1
2667 Female, age 75, unknown 69.5
1815 Male, age 53, unknown 66.4
1816 Male, age 51, unknown 66.2
2825 Male, age 18, unknown 62.9
1944 Female, age 72, unknown 60.1
2316 Male, age 76, right hemisphere 60.1
2273 Male, age 74, both hemispheres 59.1
2407 Male, age 75, both hemispheres 47.3
Red nucleus
nTPM: 77.0
1821 Female, age 72, unknown 97.4
1904 Male, age 53, unknown 88.2
2503 Female, age 72, unknown 82.9
2785 Male, age 18, unknown 82.8
2227 Male, age 72, unknown 82.7
1865 Male, age 51, unknown 81.9
2769 Male, age 72, unknown 78.4
1954 Female, age 42, unknown 74.8
2588 Male, age 74, left hemisphere 70.1
2823 Male, age 76, right hemisphere 65.8
2725 Female, age 75, unknown 60.3
2584 Male, age 75, left hemisphere 59.1
Substantia nigra
nTPM: 67.5
1851 Male, age 51, unknown 76.9
1916 Female, age 42, unknown 70.1
2665 Male, age 74, both hemispheres 69.3
1889 Female, age 72, unknown 67.2
2590 Female, age 75, unknown 67.1
1941 Male, age 53, unknown 66.2
2583 Male, age 75, right hemisphere 65.8
2409 Female, age 72, unknown 65.2
2241 Male, age 72, unknown 64.3
2699 Male, age 18, unknown 62.7
Superior colliculus
nTPM: 65.5
1913 Female, age 42, unknown 79.1
2587 Male, age 74, left hemisphere 70.5
1995 Male, age 72, unknown 69.6
1796 Male, age 53, unknown 67.7
2668 Female, age 75, unknown 66.6
1839 Male, age 51, unknown 66.1
2664 Male, age 75, both hemispheres 61.7
2261 Male, age 18, unknown 58.5
2087 Female, age 72, unknown 58.3
1895 Male, age 76, right hemisphere 56.5
Ventral tegmental area
nTPM: 71.9
2410 Female, age 72, unknown 83.9
2223 Female, age 72, unknown 80.5
1915 Female, age 42, unknown 74.5
2218 Male, age 76, both hemispheres 67.1
2021 Male, age 53, unknown 64.8
1942 Male, age 51, unknown 60.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 167.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 167.9
Samples: 183

Max nTPM: 330.3
Min nTPM: 95.0
Std nTPM: 40.3
Median nTPM: 159.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 330.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 284.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 279.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 272.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 267.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 264.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 263.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 260.3
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 255.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 248.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 246.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 108.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 108.4
FF:10158-103A5 76 years, female 108.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 87.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 73.7
Samples: 4

Max nTPM: 98.1
Min nTPM: 60.3
Sample A Female 98.1
Sample B Female 69.8
Sample C Male 66.5
Sample D Male 60.3
Midbrain
nTPM: 79.8
Samples: 4

Max nTPM: 88.1
Min nTPM: 70.0
Sample A Female 88.1
Sample B Female 70.0
Sample C Male 88.0
Sample D Male 73.1
Periaqueductal gray
nTPM: 64.8
Samples: 3

Max nTPM: 72.1
Min nTPM: 59.5
Sample B Female 62.7
Sample C Male 72.1
Sample D Male 59.5
Superior colliculi
nTPM: 87.1
Samples: 4

Max nTPM: 103.8
Min nTPM: 73.6
Sample A Female 103.8
Sample B Female 74.3
Sample C Male 96.6
Sample D Male 73.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 41.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.3
Samples: 4

Max nTPM: 43.5
Min nTPM: 39.6
Sample A Male 43.5
Sample B Male 42.0
Sample C Female 40.1
Sample D Female 39.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68919057 Antisense, RP_050301_02_D12, Mouse strain C57BL/6J (56 days, male) 0.0

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