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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:173.3 nTPM
HPA Brain:130.1 nTPM
GTEx:173.3 nTPM
FANTOM5:87.7 Scaled Tags Per Million
Pig:100.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 129.0
1981 Female, age 72, midline 168.0
2565 Male, age 75, midline 142.9
2194 Female, age 79, both hemispheres 123.9
2816 Male, age 47, midline 118.3
2048 Male, age 55, midline 91.8
Cervical spinal cord, dorsal horn
nTPM: 130.1
2173 Female, age 72, unknown 163.5
2296 Male, age 66, both hemispheres 152.5
2069 Male, age 47, both hemispheres 138.3
2721 Male, age 90, both hemispheres 111.7
2297 Male, age 75, both hemispheres 108.7
1877 Male, age 55, unknown 106.0
Cervical spinal cord, ventral horn
nTPM: 128.4
2098 Female, age 72, unknown 179.4
2809 Male, age 90, both hemispheres 134.6
2480 Male, age 75, both hemispheres 126.6
2295 Male, age 66, both hemispheres 123.7
2068 Male, age 55, unknown 119.5
2820 Female, age 79, both hemispheres 86.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 173.3
Samples: 204

Max nTPM: 338.7
Min nTPM: 100.7
Std nTPM: 38.5
Median nTPM: 168.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 338.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 304.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 282.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 273.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 262.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 261.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 260.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 252.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 250.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 249.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 232.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 231.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 229.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 229.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 228.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 225.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 225.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 224.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 224.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 222.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 222.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 221.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 220.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 218.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 218.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 217.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 215.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 215.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 214.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 212.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 212.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 211.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 210.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 209.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 209.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 206.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 206.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 206.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 205.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 203.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 203.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 202.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 199.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 199.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 199.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 198.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 198.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 197.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 197.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 196.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 195.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 195.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 195.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 194.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 191.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 190.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 190.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 189.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 189.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 189.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 188.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 188.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 188.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 187.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 187.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 187.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 186.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 186.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 184.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 184.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 183.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 183.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 182.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 182.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 182.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 182.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 182.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 181.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 181.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 181.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 179.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 179.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 178.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 178.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 177.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 177.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 177.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 176.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 176.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 175.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 175.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 174.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 174.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 172.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 172.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 170.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 170.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 169.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 169.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 169.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 169.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 168.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 168.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 167.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 167.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 167.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 167.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 167.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 167.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 165.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 165.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 165.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 164.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 164.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 163.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 163.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 162.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 162.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 161.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 161.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 161.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 161.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 161.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 160.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 160.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 158.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 158.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 158.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 158.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 158.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 156.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 155.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 155.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 155.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 154.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 154.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 153.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 153.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 152.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 151.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 151.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 150.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 149.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 148.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 148.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 148.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 147.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 147.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 146.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 146.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 146.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 146.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 145.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 145.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 145.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 145.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 145.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 144.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 144.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 143.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 142.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 142.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 142.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 141.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 140.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 139.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 139.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 138.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 136.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 136.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 135.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 134.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 133.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 133.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 133.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 132.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 131.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 130.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 130.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 129.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 128.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 127.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 127.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 125.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 125.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 124.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 124.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 124.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 124.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 123.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 123.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 122.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 122.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 122.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 120.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 120.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 118.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 117.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 116.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 112.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 107.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 103.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 102.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 100.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

87.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 87.7
FF:10181-103D1 60 years, female 87.7
FF:10159-103A6 76 years, female 87.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 84.8
Samples: 4

Max nTPM: 102.2
Min nTPM: 76.9
Sample A Female 76.9
Sample B Female 78.6
Sample C Male 102.2
Sample D Male 81.3
Ventral spinal cord
nTPM: 100.4
Samples: 4

Max nTPM: 105.1
Min nTPM: 90.5
Sample A Female 90.5
Sample B Female 102.9
Sample C Male 103.2
Sample D Male 105.1

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