MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:179.4 nTPM
HPA Brain:119.5 nTPM
GTEx:179.4 nTPM
FANTOM5:132.9 Scaled Tags Per Million
Pig:93.9 nTPM
Mouse:88.1 nTPM
Allen mouse:6.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 119.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.6
2586 Male, age 75, left hemisphere 121.8
2411 Female, age 72, unknown 118.7
2828 Female, age 72, unknown 117.7
1827 Male, age 72, unknown 106.9
2019 Male, age 18, unknown 104.7
1870 Female, age 42, unknown 102.4
2219 Male, age 76, both hemispheres 97.4
2666 Male, age 74, left hemisphere 93.6
1833 Male, age 53, unknown 93.5
1830 Male, age 51, unknown 89.1
Dorsal raphe nucleus
nTPM: 118.6
2298 Female, age 72, unknown 148.2
2750 Male, age 76, both hemispheres 120.1
2047 Male, age 72, unknown 113.2
1828 Male, age 53, unknown 109.0
2016 Female, age 72, unknown 102.3
Inferior colliculus
nTPM: 96.6
2097 Female, age 72, unknown 110.3
1890 Male, age 53, unknown 96.3
1848 Female, age 42, unknown 96.0
2849 Male, age 72, unknown 84.0
Median raphe nucleus
nTPM: 116.1
2220 Male, age 76, midline 116.1
Periaquaductal grey, anterior
nTPM: 113.8
1795 Male, age 51, unknown 120.3
2502 Female, age 75, unknown 111.3
1947 Male, age 18, unknown 109.9
Periaquaductal grey, dorsal
nTPM: 95.3
1840 Male, age 53, unknown 101.0
2464 Female, age 72, unknown 97.8
2850 Male, age 76, both hemispheres 96.8
1831 Male, age 72, unknown 85.6
Periaquaductal grey, lateral
nTPM: 101.6
2272 Male, age 74, both hemispheres 117.0
2140 Male, age 76, both hemispheres 99.1
2053 Male, age 18, unknown 88.8
Pretectal area
nTPM: 109.3
2273 Male, age 74, both hemispheres 127.8
2007 Male, age 72, unknown 124.4
1816 Male, age 51, unknown 118.2
1817 Female, age 42, unknown 117.6
1815 Male, age 53, unknown 110.7
1944 Female, age 72, unknown 110.4
2667 Female, age 75, unknown 108.8
2224 Female, age 72, unknown 108.5
2316 Male, age 76, right hemisphere 102.1
2825 Male, age 18, unknown 96.1
2407 Male, age 75, both hemispheres 77.4
Red nucleus
nTPM: 106.7
2503 Female, age 72, unknown 125.4
2227 Male, age 72, unknown 117.8
2785 Male, age 18, unknown 113.6
2769 Male, age 72, unknown 113.5
1904 Male, age 53, unknown 111.2
2725 Female, age 75, unknown 110.3
1821 Female, age 72, unknown 108.7
1954 Female, age 42, unknown 104.8
1865 Male, age 51, unknown 104.0
2823 Male, age 76, right hemisphere 98.4
2588 Male, age 74, left hemisphere 88.8
2584 Male, age 75, left hemisphere 84.3
Substantia nigra
nTPM: 111.4
1916 Female, age 42, unknown 151.1
1851 Male, age 51, unknown 135.3
2699 Male, age 18, unknown 114.0
1889 Female, age 72, unknown 108.3
1941 Male, age 53, unknown 108.3
2590 Female, age 75, unknown 106.0
2241 Male, age 72, unknown 99.3
2409 Female, age 72, unknown 99.0
2583 Male, age 75, right hemisphere 97.7
2665 Male, age 74, both hemispheres 95.1
Superior colliculus
nTPM: 103.9
1796 Male, age 53, unknown 124.9
2261 Male, age 18, unknown 122.6
2087 Female, age 72, unknown 108.6
1995 Male, age 72, unknown 107.9
1913 Female, age 42, unknown 107.4
2668 Female, age 75, unknown 105.0
2587 Male, age 74, left hemisphere 97.9
2664 Male, age 75, both hemispheres 93.2
1839 Male, age 51, unknown 89.5
1895 Male, age 76, right hemisphere 81.6
Ventral tegmental area
nTPM: 119.5
2410 Female, age 72, unknown 134.7
1915 Female, age 42, unknown 130.7
2218 Male, age 76, both hemispheres 118.1
1942 Male, age 51, unknown 115.3
2223 Female, age 72, unknown 113.1
2021 Male, age 53, unknown 105.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 179.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 179.4
Samples: 183

Max nTPM: 449.3
Min nTPM: 79.5
Std nTPM: 46.7
Median nTPM: 169.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 449.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 339.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 307.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 303.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 298.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 287.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 284.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 280.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 274.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 274.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 270.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 132.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.9
FF:10158-103A5 76 years, female 132.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 93.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 86.3
Samples: 4

Max nTPM: 115.1
Min nTPM: 66.3
Sample A Female 115.1
Sample B Female 66.3
Sample C Male 82.2
Sample D Male 81.5
Midbrain
nTPM: 93.9
Samples: 4

Max nTPM: 158.3
Min nTPM: 62.8
Sample A Female 158.3
Sample B Female 73.6
Sample C Male 80.9
Sample D Male 62.8
Periaqueductal gray
nTPM: 67.4
Samples: 3

Max nTPM: 77.6
Min nTPM: 60.9
Sample B Female 63.6
Sample C Male 77.6
Sample D Male 60.9
Superior colliculi
nTPM: 84.0
Samples: 4

Max nTPM: 98.9
Min nTPM: 62.9
Sample A Female 98.9
Sample B Female 62.9
Sample C Male 95.9
Sample D Male 78.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 88.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.1
Samples: 4

Max nTPM: 102.5
Min nTPM: 76.8
Sample A Male 102.5
Sample B Male 82.9
Sample C Female 76.8
Sample D Female 90.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
68269664 Antisense, RP_041129_02_A05, Mouse strain C57BL/6J (56 days, male) 6.8

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