We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SCN1B
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SCN1B
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:50.9 nTPM
HPA Brain:104.8 nTPM
GTEx:50.9 nTPM
FANTOM5:21.7 Scaled Tags Per Million
Pig:27.4 nTPM
Mouse:285.7 nTPM
Allen mouse:22.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.8
Sample id Sample description nTPM
Amygdala
nTPM: 104.8
2814 Male, age 76, right hemisphere 282.7
2695 Female, age 67, right hemisphere 98.5
2517 Female, age 94, left hemisphere 55.8
2514 Male, age 75, right hemisphere 48.0
1987 Female, age 91, left hemisphere 38.9
Basal amygdala
nTPM: 85.9
1955 Male, age 76, both hemispheres 130.2
2110 Male, age 80, left hemisphere 119.0
2685 Female, age 94, left hemisphere 72.8
2827 Female, age 67, right hemisphere 71.2
2243 Female, age 91, right hemisphere 65.4
2609 Male, age 75, right hemisphere 56.4
Central amygdala
nTPM: 104.5
1905 Male, age 76, both hemispheres 276.1
2826 Female, age 94, left hemisphere 106.2
2239 Male, age 80, left hemisphere 64.0
2515 Male, age 75, right hemisphere 40.1
2701 Female, age 91, right hemisphere 36.0
Corticomedial amygdala
nTPM: 68.0
2240 Male, age 76, both hemispheres 89.0
2242 Female, age 91, right hemisphere 79.4
2829 Male, age 80, left hemisphere 77.3
2535 Female, age 67, right hemisphere 66.8
2429 Female, age 94, left hemisphere 51.8
2428 Male, age 75, right hemisphere 43.6
Lateral amygdala
nTPM: 98.0
1883 Male, age 76, both hemispheres 250.8
2534 Female, age 94, left hemisphere 111.6
2830 Female, age 67, right hemisphere 74.5
2256 Male, age 80, left hemisphere 57.1
2255 Female, age 91, right hemisphere 48.1
2516 Male, age 75, right hemisphere 46.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 50.9
Samples: 181

Max nTPM: 137.2
Min nTPM: 17.4
Std nTPM: 24.5
Median nTPM: 43.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 137.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 128.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 125.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 111.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 111.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 107.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 103.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 102.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 101.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 100.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 99.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 96.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 94.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 93.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 92.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 91.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 89.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 88.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 87.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 83.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 81.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 80.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 80.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 80.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 79.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 79.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 78.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 75.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 75.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 75.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 74.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 74.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 73.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 73.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 71.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 71.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 71.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 70.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 70.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 69.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 69.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 69.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 68.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 68.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 66.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 65.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 63.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 63.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 63.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 61.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 61.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 61.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 61.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 60.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 60.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 60.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 59.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 58.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 58.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 58.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 57.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 57.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 57.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 54.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 53.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 53.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 53.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 53.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 52.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 51.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 50.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 50.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 50.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 50.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 48.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 48.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 48.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 47.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 47.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 47.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 46.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 46.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 46.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 45.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 44.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 44.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 44.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 44.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 43.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 43.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 43.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 43.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 42.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 41.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 41.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 41.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 41.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 40.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 40.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 40.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 40.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 40.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 40.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 40.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 39.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 39.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 39.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 39.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 39.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 38.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 38.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 38.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 38.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 37.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 37.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 37.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 36.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 36.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 36.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 36.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 36.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 35.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 35.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 35.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 35.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 35.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 34.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 34.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 34.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 34.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 33.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 33.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 32.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 32.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 32.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 32.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 32.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 31.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 31.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 31.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 31.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 31.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 31.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 31.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 31.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 31.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 30.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 30.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 30.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 30.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 30.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 30.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 29.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 29.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 29.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 29.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 28.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 28.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 28.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 27.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 27.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 26.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 26.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 25.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 25.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 24.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 24.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 23.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 23.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 22.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 21.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 20.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 20.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 19.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 19.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 18.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 18.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 18.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 18.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 17.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 17.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

21.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 21.7
FF:10151-102I7 76 years, female 21.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.4
Pig sample Sample description nTPM
Amygdala
nTPM: 27.4
Samples: 4

Max nTPM: 39.6
Min nTPM: 16.7
Sample A Female 39.6
Sample B Female 23.8
Sample C Male 29.4
Sample D Male 16.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

285.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 285.8
Samples: 4

Max nTPM: 418.6
Min nTPM: 237.2
Sample A Male 241.9
Sample B Male 245.3
Sample C Female 418.6
Sample D Female 237.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.8
77454673 Antisense, RP_070129_01_C06, Mouse strain C57BL/6J (56 days, male) 22.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo