BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:159.6 nTPM
HPA Brain:135.7 nTPM
GTEx:159.6 nTPM
FANTOM5:233.4 Scaled Tags Per Million
Macaque:56.2 nTPM
Mouse:25.8 nTPM
Rat:50.1 nTPM
Pig:68.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 135.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.0
1870 Female, age 42, unknown 122.3
2828 Female, age 72, unknown 114.9
1833 Male, age 53, unknown 102.1
2411 Female, age 72, unknown 98.6
2586 Male, age 75, left hemisphere 90.4
2219 Male, age 76, both hemispheres 89.8
2666 Male, age 74, left hemisphere 87.5
1827 Male, age 72, unknown 87.3
1830 Male, age 51, unknown 86.1
2019 Male, age 18, unknown 71.3
Dorsal raphe nucleus
nTPM: 130.7
2016 Female, age 72, unknown 160.2
2047 Male, age 72, unknown 144.8
1828 Male, age 53, unknown 117.9
2298 Female, age 72, unknown 117.2
2750 Male, age 76, both hemispheres 113.4
Inferior colliculus
nTPM: 106.0
1848 Female, age 42, unknown 119.1
2849 Male, age 72, unknown 107.1
1890 Male, age 53, unknown 99.6
2097 Female, age 72, unknown 98.2
Median raphe nucleus
nTPM: 135.7
2220 Male, age 76, midline 135.7
Periaquaductal grey, anterior
nTPM: 118.7
1795 Male, age 51, unknown 121.0
2502 Female, age 75, unknown 117.9
1947 Male, age 18, unknown 117.2
Periaquaductal grey, dorsal
nTPM: 134.0
1840 Male, age 53, unknown 156.6
2850 Male, age 76, both hemispheres 154.5
2464 Female, age 72, unknown 120.6
1831 Male, age 72, unknown 104.2
Periaquaductal grey, lateral
nTPM: 124.9
2140 Male, age 76, both hemispheres 146.5
2053 Male, age 18, unknown 137.5
2272 Male, age 74, both hemispheres 90.7
Pretectal area
nTPM: 106.1
2224 Female, age 72, unknown 136.0
2667 Female, age 75, unknown 128.7
2316 Male, age 76, right hemisphere 123.4
2825 Male, age 18, unknown 116.1
1815 Male, age 53, unknown 111.7
1817 Female, age 42, unknown 104.3
1944 Female, age 72, unknown 104.3
2273 Male, age 74, both hemispheres 101.0
1816 Male, age 51, unknown 95.5
2407 Male, age 75, both hemispheres 76.4
2007 Male, age 72, unknown 69.9
Red nucleus
nTPM: 103.1
2823 Male, age 76, right hemisphere 125.3
2503 Female, age 72, unknown 120.2
1904 Male, age 53, unknown 119.1
1821 Female, age 72, unknown 115.0
1954 Female, age 42, unknown 113.0
2769 Male, age 72, unknown 106.9
2227 Male, age 72, unknown 106.7
1865 Male, age 51, unknown 103.0
2725 Female, age 75, unknown 100.5
2588 Male, age 74, left hemisphere 87.5
2785 Male, age 18, unknown 76.8
2584 Male, age 75, left hemisphere 63.1
Substantia nigra
nTPM: 120.5
2699 Male, age 18, unknown 184.6
2409 Female, age 72, unknown 149.2
2241 Male, age 72, unknown 146.0
1851 Male, age 51, unknown 137.5
1916 Female, age 42, unknown 123.7
1889 Female, age 72, unknown 112.6
2665 Male, age 74, both hemispheres 94.7
2590 Female, age 75, unknown 93.0
2583 Male, age 75, right hemisphere 84.1
1941 Male, age 53, unknown 80.2
Superior colliculus
nTPM: 106.3
1913 Female, age 42, unknown 144.1
1995 Male, age 72, unknown 134.4
2087 Female, age 72, unknown 111.9
1895 Male, age 76, right hemisphere 108.0
2668 Female, age 75, unknown 107.5
1796 Male, age 53, unknown 106.0
1839 Male, age 51, unknown 99.6
2261 Male, age 18, unknown 92.4
2587 Male, age 74, left hemisphere 85.0
2664 Male, age 75, both hemispheres 74.4
Ventral tegmental area
nTPM: 123.0
2410 Female, age 72, unknown 127.5
2021 Male, age 53, unknown 126.2
1942 Male, age 51, unknown 125.5
2218 Male, age 76, both hemispheres 125.4
1915 Female, age 42, unknown 124.3
2223 Female, age 72, unknown 109.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 159.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 159.6
Samples: 183

Max nTPM: 325.0
Min nTPM: 21.8
Std nTPM: 55.9
Median nTPM: 146.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 325.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 315.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 308.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 301.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 293.9
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 284.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 283.8
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 276.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 273.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 270.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 268.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 233.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 233.4
FF:10158-103A5 76 years, female 233.4

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 56.2
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 56.2
Samples: 1

Max nTPM: 56.2
Min nTPM: 56.2
Sample A 56.2
Midbrain
nTPM: 46.6
Samples: 1

Max nTPM: 46.6
Min nTPM: 46.6
Sample A 46.6
Superior colliculi
nTPM: 32.3
Samples: 1

Max nTPM: 32.3
Min nTPM: 32.3
Sample A 32.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 68.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 68.9
Samples: 3

Max nTPM: 77.4
Min nTPM: 63.9
Sample A Female 77.4
Sample B Female 65.3
Sample C Male 63.9
Midbrain
nTPM: 58.7
Samples: 3

Max nTPM: 69.7
Min nTPM: 44.2
Sample B Female 69.7
Sample C Male 62.1
Sample D Male 44.2
Periaqueductal gray
nTPM: 67.7
Samples: 3

Max nTPM: 69.7
Min nTPM: 66.0
Sample B Female 67.5
Sample C Male 69.7
Sample D Male 66.0
Superior colliculi
nTPM: 59.3
Samples: 4

Max nTPM: 62.6
Min nTPM: 55.8
Sample A Female 62.6
Sample B Female 55.8
Sample C Male 62.0
Sample D Male 56.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.8
Samples: 4

Max nTPM: 27.0
Min nTPM: 23.9
Sample A 26.6
Sample B 23.9
Sample C 25.8
Sample D 27.0

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 50.1
Rat sample Sample description nTPM
Midbrain
nTPM: 50.1
Samples: 4

Max nTPM: 52.6
Min nTPM: 46.2
Sample A 49.8
Sample A 46.2
Sample A 51.9
Sample A 52.6

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