MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:85.8 nTPM
HPA Brain:115.8 nTPM
GTEx:85.8 nTPM
FANTOM5:115.5 Scaled Tags Per Million
Pig:111.9 nTPM
Mouse:49.6 nTPM
Allen mouse:5.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 115.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.1
2586 Male, age 75, left hemisphere 136.6
2019 Male, age 18, unknown 102.4
2411 Female, age 72, unknown 100.7
1870 Female, age 42, unknown 90.9
2828 Female, age 72, unknown 86.7
1830 Male, age 51, unknown 86.6
2666 Male, age 74, left hemisphere 83.6
1833 Male, age 53, unknown 81.8
1827 Male, age 72, unknown 77.2
2219 Male, age 76, both hemispheres 54.5
Dorsal raphe nucleus
nTPM: 64.7
2750 Male, age 76, both hemispheres 89.4
1828 Male, age 53, unknown 68.5
2047 Male, age 72, unknown 59.4
2016 Female, age 72, unknown 57.0
2298 Female, age 72, unknown 49.2
Inferior colliculus
nTPM: 65.2
1848 Female, age 42, unknown 71.7
1890 Male, age 53, unknown 68.4
2097 Female, age 72, unknown 61.5
2849 Male, age 72, unknown 59.3
Median raphe nucleus
nTPM: 52.3
2220 Male, age 76, midline 52.3
Periaquaductal grey, anterior
nTPM: 74.4
1947 Male, age 18, unknown 80.9
2502 Female, age 75, unknown 74.9
1795 Male, age 51, unknown 67.5
Periaquaductal grey, dorsal
nTPM: 45.9
1831 Male, age 72, unknown 54.1
1840 Male, age 53, unknown 50.7
2464 Female, age 72, unknown 49.6
2850 Male, age 76, both hemispheres 29.3
Periaquaductal grey, lateral
nTPM: 42.5
2053 Male, age 18, unknown 56.4
2272 Male, age 74, both hemispheres 38.7
2140 Male, age 76, both hemispheres 32.5
Pretectal area
nTPM: 69.7
2007 Male, age 72, unknown 101.9
1817 Female, age 42, unknown 85.1
1944 Female, age 72, unknown 84.0
2407 Male, age 75, both hemispheres 83.7
1815 Male, age 53, unknown 79.5
1816 Male, age 51, unknown 77.4
2316 Male, age 76, right hemisphere 62.7
2825 Male, age 18, unknown 61.8
2667 Female, age 75, unknown 53.3
2224 Female, age 72, unknown 42.1
2273 Male, age 74, both hemispheres 34.7
Red nucleus
nTPM: 115.8
2584 Male, age 75, left hemisphere 156.1
2588 Male, age 74, left hemisphere 154.3
1904 Male, age 53, unknown 118.4
2769 Male, age 72, unknown 116.6
2823 Male, age 76, right hemisphere 116.5
2725 Female, age 75, unknown 114.2
2227 Male, age 72, unknown 109.6
2785 Male, age 18, unknown 107.6
1865 Male, age 51, unknown 105.7
1821 Female, age 72, unknown 104.3
2503 Female, age 72, unknown 94.5
1954 Female, age 42, unknown 91.4
Substantia nigra
nTPM: 89.0
2583 Male, age 75, right hemisphere 131.7
2665 Male, age 74, both hemispheres 97.8
2590 Female, age 75, unknown 97.0
1851 Male, age 51, unknown 93.2
1889 Female, age 72, unknown 92.2
1916 Female, age 42, unknown 91.2
2409 Female, age 72, unknown 90.0
1941 Male, age 53, unknown 75.6
2699 Male, age 18, unknown 63.2
2241 Male, age 72, unknown 58.1
Superior colliculus
nTPM: 79.3
2668 Female, age 75, unknown 87.7
1995 Male, age 72, unknown 87.1
2587 Male, age 74, left hemisphere 83.2
2087 Female, age 72, unknown 82.0
1913 Female, age 42, unknown 80.8
1895 Male, age 76, right hemisphere 79.9
1796 Male, age 53, unknown 74.0
2664 Male, age 75, both hemispheres 73.1
1839 Male, age 51, unknown 73.0
2261 Male, age 18, unknown 72.2
Ventral tegmental area
nTPM: 78.1
2410 Female, age 72, unknown 100.9
2223 Female, age 72, unknown 90.4
1942 Male, age 51, unknown 80.8
2218 Male, age 76, both hemispheres 66.7
1915 Female, age 42, unknown 66.0
2021 Male, age 53, unknown 63.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 85.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.8
Samples: 183

Max nTPM: 354.9
Min nTPM: 15.3
Std nTPM: 39.9
Median nTPM: 83.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 354.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 246.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 198.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 195.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 190.3
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 189.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 176.3
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 157.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 151.8
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 151.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 144.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 115.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.5
FF:10158-103A5 76 years, female 115.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 111.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 77.8
Samples: 4

Max nTPM: 88.9
Min nTPM: 58.3
Sample A Female 88.9
Sample B Female 58.3
Sample C Male 79.7
Sample D Male 84.2
Midbrain
nTPM: 111.9
Samples: 4

Max nTPM: 154.1
Min nTPM: 65.9
Sample A Female 127.1
Sample B Female 65.9
Sample C Male 154.1
Sample D Male 100.5
Periaqueductal gray
nTPM: 58.8
Samples: 3

Max nTPM: 62.7
Min nTPM: 53.4
Sample B Female 60.4
Sample C Male 62.7
Sample D Male 53.4
Superior colliculi
nTPM: 98.2
Samples: 4

Max nTPM: 127.3
Min nTPM: 63.2
Sample A Female 94.9
Sample B Female 63.2
Sample C Male 127.3
Sample D Male 107.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 49.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.6
Samples: 4

Max nTPM: 53.8
Min nTPM: 46.8
Sample A Male 46.8
Sample B Male 49.3
Sample C Female 48.4
Sample D Female 53.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
74658055 Antisense, RP_060220_04_C10, Mouse strain C57BL/6J (56 days, male) 6.4
69548819 Antisense, RP_050426_02_D04, Mouse strain C57BL/6J (56 days, male) 5.3

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