A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.5
nTPM
Monaco:
38.6
nTPM
Schmiedel:
14.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.5
HPA sample
nTPM
Memory B-cell nTPM: 12.9
Samples: 6
Max nTPM: 17.7
Min nTPM: 8.2
P10809_1017
8.2
P10809_1025
8.8
P10809_1044
17.5
P10809_1063
13.1
P10809_1092
17.7
P10809_1105
11.8
Naive B-cell nTPM: 13.5
Samples: 6
Max nTPM: 18.7
Min nTPM: 10.3
P10809_1011
12.0
P10809_1029
14.9
P10809_1048
10.3
P10809_1067
18.7
P10809_1091
12.0
P10809_1104
12.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 20.8
Samples: 4
Max nTPM: 27.9
Min nTPM: 17.4
RHH5310_R3677
19.7
RHH5218_R3590
18.1
RHH5247_R3619
17.4
RHH5276_R3648
27.9
Naive B-cell nTPM: 18.2
Samples: 4
Max nTPM: 21.9
Min nTPM: 11.4
RHH5308_R3675
21.9
RHH5216_R3588
20.6
RHH5245_R3617
18.8
RHH5274_R3646
11.4
Non-switched memory B-cell nTPM: 17.9
Samples: 4
Max nTPM: 34.0
Min nTPM: 8.2
RHH5309_R3676
12.8
RHH5217_R3589
16.5
RHH5246_R3618
8.2
RHH5275_R3647
34.0
Plasmablast nTPM: 38.6
Samples: 4
Max nTPM: 55.7
Min nTPM: 15.2
RHH5312_R3679
42.6
RHH5220_R3592
55.7
RHH5249_R3621
15.2
RHH5278_R3650
40.9
Switched memory B-cell nTPM: 16.5
Samples: 4
Max nTPM: 22.7
Min nTPM: 11.8
RHH5311_R3678
17.9
RHH5219_R3591
11.8
RHH5248_R3620
22.7
RHH5277_R3649
13.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.9
Schmiedel sample id
TPM
Naive B-cell TPM: 14.9
Samples: 91
Max TPM: 18.8
Min TPM: 9.2
B_CELL_NAIVE_1
18.8
B_CELL_NAIVE_2
18.1
B_CELL_NAIVE_3
17.5
B_CELL_NAIVE_4
17.3
B_CELL_NAIVE_5
17.3
B_CELL_NAIVE_6
17.1
B_CELL_NAIVE_7
17.1
B_CELL_NAIVE_8
17.1
B_CELL_NAIVE_9
17.0
B_CELL_NAIVE_10
17.0
B_CELL_NAIVE_11
16.8
B_CELL_NAIVE_12
16.7
B_CELL_NAIVE_13
16.6
B_CELL_NAIVE_14
16.5
B_CELL_NAIVE_15
16.5
B_CELL_NAIVE_16
16.5
B_CELL_NAIVE_17
16.4
B_CELL_NAIVE_18
16.3
B_CELL_NAIVE_19
16.2
B_CELL_NAIVE_20
16.2
B_CELL_NAIVE_21
16.1
B_CELL_NAIVE_22
16.0
B_CELL_NAIVE_23
15.9
B_CELL_NAIVE_24
15.9
B_CELL_NAIVE_25
15.9
B_CELL_NAIVE_26
15.9
B_CELL_NAIVE_27
15.7
B_CELL_NAIVE_28
15.6
B_CELL_NAIVE_29
15.6
B_CELL_NAIVE_30
15.5
B_CELL_NAIVE_31
15.5
B_CELL_NAIVE_32
15.4
B_CELL_NAIVE_33
15.4
B_CELL_NAIVE_34
15.4
B_CELL_NAIVE_35
15.4
B_CELL_NAIVE_36
15.3
B_CELL_NAIVE_37
15.3
B_CELL_NAIVE_38
15.2
B_CELL_NAIVE_39
15.2
B_CELL_NAIVE_40
15.2
B_CELL_NAIVE_41
15.2
B_CELL_NAIVE_42
15.2
B_CELL_NAIVE_43
15.2
B_CELL_NAIVE_44
15.2
B_CELL_NAIVE_45
15.0
B_CELL_NAIVE_46
15.0
B_CELL_NAIVE_47
15.0
B_CELL_NAIVE_48
15.0
B_CELL_NAIVE_49
15.0
B_CELL_NAIVE_50
14.9
B_CELL_NAIVE_51
14.8
B_CELL_NAIVE_52
14.8
B_CELL_NAIVE_53
14.8
B_CELL_NAIVE_54
14.6
B_CELL_NAIVE_55
14.6
B_CELL_NAIVE_56
14.6
B_CELL_NAIVE_57
14.6
B_CELL_NAIVE_58
14.5
B_CELL_NAIVE_59
14.5
B_CELL_NAIVE_60
14.4
B_CELL_NAIVE_61
14.4
B_CELL_NAIVE_62
14.4
B_CELL_NAIVE_63
14.3
B_CELL_NAIVE_64
14.3
B_CELL_NAIVE_65
14.3
B_CELL_NAIVE_66
14.2
B_CELL_NAIVE_67
14.2
B_CELL_NAIVE_68
14.2
B_CELL_NAIVE_69
14.1
B_CELL_NAIVE_70
14.1
B_CELL_NAIVE_71
13.9
B_CELL_NAIVE_72
13.9
B_CELL_NAIVE_73
13.9
B_CELL_NAIVE_74
13.9
B_CELL_NAIVE_75
13.5
B_CELL_NAIVE_76
13.4
B_CELL_NAIVE_77
13.3
B_CELL_NAIVE_78
13.3
B_CELL_NAIVE_79
13.2
B_CELL_NAIVE_80
13.1
B_CELL_NAIVE_81
13.1
B_CELL_NAIVE_82
13.0
B_CELL_NAIVE_83
12.9
B_CELL_NAIVE_84
12.9
B_CELL_NAIVE_85
12.6
B_CELL_NAIVE_86
12.4
B_CELL_NAIVE_87
12.2
B_CELL_NAIVE_88
12.0
B_CELL_NAIVE_89
11.6
B_CELL_NAIVE_90
11.2
B_CELL_NAIVE_91
9.2
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