A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.8
nTPM
Monaco:
24.7
nTPM
Schmiedel:
37.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.8
HPA sample
nTPM
Classical monocyte nTPM: 1.4
Samples: 6
Max nTPM: 2.4
Min nTPM: 0.8
P10809_1003
1.5
P10809_1020
1.0
P10809_1039
0.9
P10809_1058
1.8
P10809_1080
2.4
P10809_1107
0.8
Intermediate monocyte nTPM: 2.9
Samples: 6
Max nTPM: 4.7
Min nTPM: 1.4
P10809_1004
4.7
P10809_1023
2.7
P10809_1042
2.1
P10809_1061
3.7
P10809_1081
2.9
P10809_1108
1.4
Non-classical monocyte nTPM: 7.8
Samples: 5
Max nTPM: 20.4
Min nTPM: 3.1
P10809_1005
6.0
P10809_1053
4.5
P10809_1072
20.4
P10809_1082
5.2
P10809_1109
3.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.7
Monaco sample
nTPM
Classical monocyte nTPM: 8.3
Samples: 4
Max nTPM: 11.9
Min nTPM: 6.0
RHH5313_R3680
6.0
RHH5221_R3593
11.9
RHH5250_R3622
9.3
RHH5279_R3651
6.0
Intermediate monocyte nTPM: 16.7
Samples: 4
Max nTPM: 28.5
Min nTPM: 8.0
RHH5314_R3681
8.0
RHH5222_R3594
21.0
RHH5251_R3623
28.5
RHH5280_R3652
9.2
Non-classical monocyte nTPM: 24.7
Samples: 4
Max nTPM: 38.9
Min nTPM: 14.3
RHH5315_R3682
20.0
RHH5223_R3595
38.9
RHH5252_R3624
25.5
RHH5281_R3653
14.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.4
Schmiedel sample id
TPM
Classical monocyte TPM: 10.0
Samples: 91
Max TPM: 23.5
Min TPM: 1.7
MONOCYTES_1
23.5
MONOCYTES_2
20.8
MONOCYTES_3
16.0
MONOCYTES_4
15.5
MONOCYTES_5
15.2
MONOCYTES_6
15.1
MONOCYTES_7
15.1
MONOCYTES_8
14.9
MONOCYTES_9
14.5
MONOCYTES_10
13.9
MONOCYTES_11
13.8
MONOCYTES_12
13.7
MONOCYTES_13
13.4
MONOCYTES_14
13.0
MONOCYTES_15
13.0
MONOCYTES_16
12.9
MONOCYTES_17
12.7
MONOCYTES_18
12.6
MONOCYTES_19
12.5
MONOCYTES_20
12.5
MONOCYTES_21
12.4
MONOCYTES_22
12.2
MONOCYTES_23
12.1
MONOCYTES_24
12.1
MONOCYTES_25
12.1
MONOCYTES_26
12.0
MONOCYTES_27
12.0
MONOCYTES_28
11.9
MONOCYTES_29
11.8
MONOCYTES_30
11.8
MONOCYTES_31
11.7
MONOCYTES_32
11.1
MONOCYTES_33
11.0
MONOCYTES_34
11.0
MONOCYTES_35
10.9
MONOCYTES_36
10.9
MONOCYTES_37
10.7
MONOCYTES_38
10.7
MONOCYTES_39
10.7
MONOCYTES_40
10.6
MONOCYTES_41
10.6
MONOCYTES_42
10.5
MONOCYTES_43
10.5
MONOCYTES_44
10.5
MONOCYTES_45
10.4
MONOCYTES_46
10.2
MONOCYTES_47
10.0
MONOCYTES_48
9.9
MONOCYTES_49
9.8
MONOCYTES_50
9.8
MONOCYTES_51
9.6
MONOCYTES_52
9.6
MONOCYTES_53
9.6
MONOCYTES_54
9.4
MONOCYTES_55
9.3
MONOCYTES_56
9.2
MONOCYTES_57
9.2
MONOCYTES_58
9.0
MONOCYTES_59
8.9
MONOCYTES_60
8.8
MONOCYTES_61
8.8
MONOCYTES_62
8.6
MONOCYTES_63
8.6
MONOCYTES_64
8.6
MONOCYTES_65
8.5
MONOCYTES_66
8.1
MONOCYTES_67
8.1
MONOCYTES_68
7.9
MONOCYTES_69
7.8
MONOCYTES_70
7.6
MONOCYTES_71
7.5
MONOCYTES_72
7.2
MONOCYTES_73
7.1
MONOCYTES_74
7.1
MONOCYTES_75
6.9
MONOCYTES_76
6.9
MONOCYTES_77
6.5
MONOCYTES_78
6.3
MONOCYTES_79
6.2
MONOCYTES_80
6.1
MONOCYTES_81
5.6
MONOCYTES_82
5.6
MONOCYTES_83
5.3
MONOCYTES_84
5.2
MONOCYTES_85
4.3
MONOCYTES_86
4.0
MONOCYTES_87
3.6
MONOCYTES_88
2.4
MONOCYTES_89
2.0
MONOCYTES_90
1.8
MONOCYTES_91
1.7
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Non-classical monocyte TPM: 37.4
Samples: 90
Max TPM: 59.5
Min TPM: 6.5
M2_1
59.5
M2_2
58.0
M2_3
57.8
M2_4
57.5
M2_5
56.7
M2_6
56.6
M2_7
55.6
M2_8
53.5
M2_9
53.4
M2_10
53.1
M2_11
53.1
M2_12
51.4
M2_13
51.1
M2_14
50.7
M2_15
48.7
M2_16
48.7
M2_17
48.7
M2_18
47.9
M2_19
47.2
M2_20
47.2
M2_21
46.6
M2_22
46.3
M2_23
45.9
M2_24
44.6
M2_25
44.4
M2_26
44.1
M2_27
43.8
M2_28
43.0
M2_29
42.8
M2_30
42.8
M2_31
42.4
M2_32
42.2
M2_33
41.9
M2_34
41.7
M2_35
41.3
M2_36
40.9
M2_37
40.5
M2_38
40.3
M2_39
40.3
M2_40
40.0
M2_41
39.5
M2_42
39.5
M2_43
38.5
M2_44
38.2
M2_45
38.2
M2_46
38.0
M2_47
37.9
M2_48
37.8
M2_49
37.4
M2_50
37.4
M2_51
36.6
M2_52
36.5
M2_53
36.0
M2_54
36.0
M2_55
35.4
M2_56
35.4
M2_57
35.3
M2_58
34.7
M2_59
34.3
M2_60
34.1
M2_61
33.9
M2_62
33.6
M2_63
33.5
M2_64
32.6
M2_65
31.6
M2_66
31.5
M2_67
30.5
M2_68
30.1
M2_69
29.4
M2_70
29.3
M2_71
28.6
M2_72
28.3
M2_73
27.8
M2_74
27.8
M2_75
27.5
M2_76
26.1
M2_77
25.4
M2_78
23.0
M2_79
21.9
M2_80
21.7
M2_81
20.7
M2_82
20.3
M2_83
19.7
M2_84
17.9
M2_85
17.4
M2_86
15.9
M2_87
10.5
M2_88
7.9
M2_89
7.3
M2_90
6.5
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