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  • DNM1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:144.3 nTPM
HPA Brain:387.6 nTPM
GTEx:144.3 nTPM
FANTOM5:251.6 Scaled Tags Per Million
Pig:200.2 nTPM
Mouse:478.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

387.6
Sample id Sample description nTPM
Amygdala
nTPM: 206.8
1987 Female, age 91, left hemisphere 282.2
2814 Male, age 76, right hemisphere 276.3
2517 Female, age 94, left hemisphere 257.5
2514 Male, age 75, right hemisphere 132.3
2695 Female, age 67, right hemisphere 85.5
Basal amygdala
nTPM: 387.6
2243 Female, age 91, right hemisphere 728.1
2685 Female, age 94, left hemisphere 467.7
2110 Male, age 80, left hemisphere 364.9
1955 Male, age 76, both hemispheres 299.6
2827 Female, age 67, right hemisphere 281.5
2609 Male, age 75, right hemisphere 183.5
Central amygdala
nTPM: 283.6
2826 Female, age 94, left hemisphere 384.0
2239 Male, age 80, left hemisphere 370.8
1905 Male, age 76, both hemispheres 262.3
2701 Female, age 91, right hemisphere 261.0
2515 Male, age 75, right hemisphere 140.2
Corticomedial amygdala
nTPM: 385.5
2242 Female, age 91, right hemisphere 579.3
2829 Male, age 80, left hemisphere 476.3
2429 Female, age 94, left hemisphere 428.5
2535 Female, age 67, right hemisphere 399.8
2240 Male, age 76, both hemispheres 276.3
2428 Male, age 75, right hemisphere 152.4
Lateral amygdala
nTPM: 274.6
2534 Female, age 94, left hemisphere 546.6
1883 Male, age 76, both hemispheres 309.6
2256 Male, age 80, left hemisphere 309.3
2255 Female, age 91, right hemisphere 279.5
2830 Female, age 67, right hemisphere 107.9
2516 Male, age 75, right hemisphere 94.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 144.3
Samples: 181

Max nTPM: 558.2
Min nTPM: 15.7
Std nTPM: 86.8
Median nTPM: 128.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 558.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 447.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 390.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 375.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 355.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 334.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 330.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 327.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 307.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 296.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 289.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 286.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 276.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 270.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 265.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 262.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 256.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 252.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 246.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 245.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 244.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 242.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 240.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 240.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 240.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 233.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 233.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 232.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 231.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 231.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 229.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 226.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 226.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 221.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 217.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 216.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 214.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 212.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 202.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 201.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 199.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 196.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 194.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 190.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 190.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 189.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 186.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 185.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 183.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 182.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 181.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 181.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 179.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 178.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 177.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 176.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 176.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 172.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 170.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 169.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 169.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 167.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 167.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 161.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 161.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 160.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 157.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 155.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 153.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 151.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 148.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 147.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 144.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 144.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 143.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 142.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 142.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 141.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 140.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 140.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 139.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 134.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 134.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 134.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 133.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 131.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 131.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 130.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 130.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 128.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 128.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 128.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 127.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 127.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 126.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 125.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 123.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 123.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 122.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 122.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 121.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 118.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 118.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 118.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 117.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 112.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 108.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 107.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 104.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 103.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 101.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 101.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 98.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 98.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 97.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 97.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 97.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 96.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 95.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 92.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 91.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 91.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 90.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 89.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 88.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 88.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 87.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 87.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 84.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 83.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 83.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 83.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 83.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 82.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 82.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 80.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 79.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 77.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 76.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 73.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 72.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 72.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 71.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 70.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 69.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 66.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 66.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 65.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 65.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 64.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 64.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 64.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 64.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 63.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 62.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 61.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 57.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 56.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 56.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 56.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 51.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 49.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 49.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 49.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 49.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 48.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 47.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 46.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 42.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 42.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 41.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 40.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 38.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 37.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 36.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 35.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 34.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 29.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 25.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 24.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 15.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

251.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 251.6
FF:10151-102I7 76 years, female 251.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.2
Pig sample Sample description nTPM
Amygdala
nTPM: 200.2
Samples: 4

Max nTPM: 308.2
Min nTPM: 117.0
Sample A Female 308.2
Sample B Female 117.0
Sample C Male 167.1
Sample D Male 208.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

478.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 478.6
Samples: 4

Max nTPM: 515.0
Min nTPM: 455.5
Sample A Male 515.0
Sample B Male 463.3
Sample C Female 480.7
Sample D Female 455.5

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