MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.1 nTPM
HPA Brain:197.4 nTPM
GTEx:71.1 nTPM
FANTOM5:6.0 Scaled Tags Per Million
Pig:210.0 nTPM
Mouse:399.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 197.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 155.7
2219 Male, age 76, both hemispheres 215.3
2666 Male, age 74, left hemisphere 179.6
1827 Male, age 72, unknown 179.1
2019 Male, age 18, unknown 171.4
2411 Female, age 72, unknown 158.2
2828 Female, age 72, unknown 148.8
2586 Male, age 75, left hemisphere 147.9
1833 Male, age 53, unknown 124.1
1870 Female, age 42, unknown 120.1
1830 Male, age 51, unknown 112.8
Dorsal raphe nucleus
nTPM: 143.0
2298 Female, age 72, unknown 191.9
2047 Male, age 72, unknown 149.8
1828 Male, age 53, unknown 142.5
2750 Male, age 76, both hemispheres 138.0
2016 Female, age 72, unknown 92.9
Inferior colliculus
nTPM: 160.4
2097 Female, age 72, unknown 189.3
1848 Female, age 42, unknown 167.3
2849 Male, age 72, unknown 143.0
1890 Male, age 53, unknown 142.0
Median raphe nucleus
nTPM: 177.2
2220 Male, age 76, midline 177.2
Periaquaductal grey, anterior
nTPM: 190.1
2502 Female, age 75, unknown 217.8
1795 Male, age 51, unknown 180.1
1947 Male, age 18, unknown 172.3
Periaquaductal grey, dorsal
nTPM: 124.3
1840 Male, age 53, unknown 135.1
2464 Female, age 72, unknown 128.2
1831 Male, age 72, unknown 124.4
2850 Male, age 76, both hemispheres 109.5
Periaquaductal grey, lateral
nTPM: 103.7
2053 Male, age 18, unknown 114.6
2140 Male, age 76, both hemispheres 107.7
2272 Male, age 74, both hemispheres 88.8
Pretectal area
nTPM: 197.4
2667 Female, age 75, unknown 304.0
1816 Male, age 51, unknown 285.9
1944 Female, age 72, unknown 274.6
2007 Male, age 72, unknown 253.5
1817 Female, age 42, unknown 244.5
1815 Male, age 53, unknown 180.8
2224 Female, age 72, unknown 161.4
2407 Male, age 75, both hemispheres 135.9
2316 Male, age 76, right hemisphere 125.4
2825 Male, age 18, unknown 122.0
2273 Male, age 74, both hemispheres 83.6
Red nucleus
nTPM: 113.0
2785 Male, age 18, unknown 169.0
1821 Female, age 72, unknown 136.9
2584 Male, age 75, left hemisphere 130.5
1954 Female, age 42, unknown 128.7
2823 Male, age 76, right hemisphere 121.8
2769 Male, age 72, unknown 116.9
2227 Male, age 72, unknown 111.6
1865 Male, age 51, unknown 108.2
2503 Female, age 72, unknown 103.2
1904 Male, age 53, unknown 102.6
2588 Male, age 74, left hemisphere 82.7
2725 Female, age 75, unknown 43.6
Substantia nigra
nTPM: 173.8
1941 Male, age 53, unknown 274.4
1916 Female, age 42, unknown 247.8
1889 Female, age 72, unknown 228.7
2665 Male, age 74, both hemispheres 207.7
1851 Male, age 51, unknown 186.4
2241 Male, age 72, unknown 160.6
2409 Female, age 72, unknown 131.3
2699 Male, age 18, unknown 122.5
2583 Male, age 75, right hemisphere 107.3
2590 Female, age 75, unknown 71.6
Superior colliculus
nTPM: 186.7
2668 Female, age 75, unknown 478.9
2087 Female, age 72, unknown 220.0
1796 Male, age 53, unknown 196.0
1895 Male, age 76, right hemisphere 189.7
2261 Male, age 18, unknown 185.5
1839 Male, age 51, unknown 144.2
2664 Male, age 75, both hemispheres 135.9
1913 Female, age 42, unknown 112.1
2587 Male, age 74, left hemisphere 109.0
1995 Male, age 72, unknown 95.3
Ventral tegmental area
nTPM: 166.1
2410 Female, age 72, unknown 211.4
2218 Male, age 76, both hemispheres 195.7
1915 Female, age 42, unknown 187.6
2223 Female, age 72, unknown 147.8
1942 Male, age 51, unknown 147.3
2021 Male, age 53, unknown 106.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 71.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.1
Samples: 183

Max nTPM: 558.8
Min nTPM: 1.0
Std nTPM: 77.2
Median nTPM: 40.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 558.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 384.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 354.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 254.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 229.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 229.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 214.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 211.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 207.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 197.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 183.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.0
FF:10158-103A5 76 years, female 6.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 210.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 134.9
Samples: 4

Max nTPM: 201.0
Min nTPM: 48.4
Sample A Female 201.0
Sample B Female 95.4
Sample C Male 194.9
Sample D Male 48.4
Midbrain
nTPM: 174.6
Samples: 4

Max nTPM: 332.1
Min nTPM: 50.8
Sample A Female 50.8
Sample B Female 97.7
Sample C Male 332.1
Sample D Male 217.7
Periaqueductal gray
nTPM: 107.7
Samples: 3

Max nTPM: 141.2
Min nTPM: 88.1
Sample B Female 93.8
Sample C Male 141.2
Sample D Male 88.1
Superior colliculi
nTPM: 210.0
Samples: 4

Max nTPM: 320.8
Min nTPM: 99.5
Sample A Female 216.6
Sample B Female 99.5
Sample C Male 320.8
Sample D Male 203.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 399.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 399.7
Samples: 4

Max nTPM: 423.6
Min nTPM: 381.9
Sample A Male 381.9
Sample B Male 396.9
Sample C Female 423.6
Sample D Female 396.2

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