A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
6.8
nTPM
Schmiedel:
38.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
NK-cell nTPM: 1.2
Samples: 6
Max nTPM: 2.3
Min nTPM: 0.7
P10809_1013
1.0
P10809_1033
1.1
P10809_1052
0.9
P10809_1071
0.9
P10809_1093
2.3
P10809_1103
0.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.8
Monaco sample
nTPM
NK-cell nTPM: 6.8
Samples: 4
Max nTPM: 7.8
Min nTPM: 6.1
RHH5316_R3683
7.8
RHH5224_R3596
6.1
RHH5253_R3625
7.0
RHH5282_R3654
6.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.6
Schmiedel sample id
TPM
NK-cell TPM: 38.6
Samples: 90
Max TPM: 50.5
Min TPM: 19.7
NK_1
50.5
NK_2
48.8
NK_3
48.4
NK_4
48.1
NK_5
48.0
NK_6
47.6
NK_7
47.3
NK_8
46.5
NK_9
46.3
NK_10
46.3
NK_11
46.0
NK_12
45.9
NK_13
45.7
NK_14
45.0
NK_15
44.9
NK_16
44.6
NK_17
44.0
NK_18
43.9
NK_19
43.0
NK_20
42.9
NK_21
42.5
NK_22
42.3
NK_23
42.3
NK_24
42.1
NK_25
42.0
NK_26
41.4
NK_27
41.3
NK_28
41.3
NK_29
41.2
NK_30
41.2
NK_31
41.1
NK_32
40.7
NK_33
40.5
NK_34
40.4
NK_35
40.1
NK_36
40.1
NK_37
40.0
NK_38
39.9
NK_39
39.4
NK_40
39.4
NK_41
38.8
NK_42
38.3
NK_43
37.8
NK_44
37.8
NK_45
37.8
NK_46
37.8
NK_47
37.7
NK_48
37.7
NK_49
37.4
NK_50
37.3
NK_51
37.2
NK_52
37.1
NK_53
37.0
NK_54
36.9
NK_55
36.8
NK_56
36.7
NK_57
36.6
NK_58
36.6
NK_59
36.4
NK_60
36.2
NK_61
36.2
NK_62
36.2
NK_63
36.0
NK_64
35.9
NK_65
35.8
NK_66
35.0
NK_67
34.6
NK_68
34.6
NK_69
34.5
NK_70
34.5
NK_71
34.1
NK_72
34.0
NK_73
33.9
NK_74
33.9
NK_75
33.7
NK_76
33.2
NK_77
33.1
NK_78
33.0
NK_79
32.9
NK_80
32.8
NK_81
32.8
NK_82
32.8
NK_83
32.7
NK_84
31.7
NK_85
31.4
NK_86
30.8
NK_87
30.1
NK_88
29.6
NK_89
28.7
NK_90
19.7
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