HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		127.676
RNA expressioni
Consensus:50.9 nTPM
HPA Brain:166.8 nTPM
GTEx:50.9 nTPM
FANTOM5:103.4 Scaled Tags Per Million
Pig:143.9 nTPM
Mouse:230.8 nTPM
Allen mouse:18.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA026685Antibody HPA063573Antibody CAB010056
Glial cells LowNot detectedNot detected
Neuronal cells LowLowHigh







HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA026685
Hippocampal formation mean intensity 127.676
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 71.300
Molecular layer of the dentate gyrus 57.257
Granular dentate gyrus 64.375
CA1 - oriens layer 61.543
CA1 - pyramidal layer 57.520
CA1 - radiatum layer 62.836
CA2 - oriens layer 64.590
CA2 - pyramidal layer 65.744
CA2 - radiatum layer 63.142
CA3 - oriens layer 97.963
CA3 - pyramidal layer 127.676
CA3 - radiatum layer 83.792
Stratum lucidum 69.467
Lacunosum moleculare 51.930
Subiculum 52.559

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 166.8
Sample id Sample description nTPM
Hippocampus
nTPM: 81.8
1898 Male, age 80, left hemisphere 155.4
1855 Male, age 76, left hemisphere 91.5
2621 Female, age 67, right hemisphere 85.5
2148 Female, age 91, left hemisphere 80.6
1911 Female, age 85, right hemisphere 46.5
2529 Female, age 94, left hemisphere 31.2
Dentate gyrus
nTPM: 91.9
1927 Female, age 91, both hemispheres 140.5
2010 Male, age 76, both hemispheres 96.6
2530 Female, age 94, left hemisphere 96.6
2246 Female, age 85, both hemispheres 76.4
2528 Male, age 74, both hemispheres 75.8
2531 Female, age 67, both hemispheres 65.7
Entorhinal gyrus
nTPM: 114.0
2613 Female, age 94, left hemisphere 159.6
1938 Female, age 85, left hemisphere 155.8
2764 Male, age 80, right hemisphere 148.3
1787 Male, age 76, left hemisphere 89.0
2686 Male, age 75, right hemisphere 74.0
2117 Female, age 91, right hemisphere 57.2
Hippocampus, CA1
nTPM: 100.8
2749 Male, age 80, left hemisphere 173.3
1873 Female, age 85, both hemispheres 118.1
2045 Male, age 76, both hemispheres 76.1
2527 Male, age 74, both hemispheres 70.8
2082 Female, age 91, right hemisphere 65.7
Hippocampus, CA2
nTPM: 94.7
1963 Male, age 80, left hemisphere 152.6
1892 Male, age 76, both hemispheres 119.4
1940 Female, age 85, left hemisphere 93.0
2113 Female, age 91, right hemisphere 75.7
2437 Female, age 94, left hemisphere 67.0
2249 Male, age 74, both hemispheres 60.5
Hippocampus, CA3
nTPM: 80.0
2137 Male, age 80, left hemisphere 102.8
2620 Female, age 94, left hemisphere 97.0
1867 Male, age 76, both hemispheres 76.9
2436 Male, age 74, both hemispheres 73.1
2861 Female, age 67, both hemispheres 68.7
1891 Female, age 85, both hemispheres 61.5
Parahippocampal cortex
nTPM: 113.3
1850 Male, age 80, both hemispheres 194.5
1990 Female, age 91, right hemisphere 155.3
1933 Female, age 85, both hemispheres 131.6
2693 Female, age 94, both hemispheres 123.0
2245 Female, age 91, both hemispheres 116.0
2532 Female, age 72, left hemisphere 105.8
2622 Female, age 67, right hemisphere 87.9
2250 Female, age 67, right hemisphere 81.2
2018 Male, age 76, both hemispheres 74.1
2692 Male, age 74, both hemispheres 63.9
Perirhinal gyrus
nTPM: 166.8
1847 Female, age 91, left hemisphere 256.5
1794 Male, age 80, right hemisphere 178.7
1841 Female, age 85, right hemisphere 156.6
2521 Female, age 94, right hemisphere 140.8
2848 Male, age 76, right hemisphere 101.4
Subiculum
nTPM: 61.9
1977 Female, age 85, both hemispheres 102.3
1901 Male, age 80, both hemispheres 74.7
2729 Female, age 91, right hemisphere 54.3
2619 Male, age 74, both hemispheres 53.4
2438 Female, age 94, left hemisphere 45.9
2042 Male, age 76, both hemispheres 40.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 50.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 50.9
Samples: 255

Max nTPM: 227.3
Min nTPM: 1.1
Std nTPM: 40.0
Median nTPM: 42.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 227.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 177.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 175.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 170.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 162.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 159.2
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 155.1
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 154.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 148.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 147.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 147.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 103.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 103.4
FF:10169-103B7 60 years, female 142.2
FF:10153-102I9 76 years, female 64.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 143.9
Pig sample Sample description nTPM
Subiculum
nTPM: 114.3
Samples: 4

Max nTPM: 158.6
Min nTPM: 94.3
Sample A Female 158.6
Sample B Female 97.9
Sample C Male 106.4
Sample D Male 94.3
Dorsal hippocampus
nTPM: 143.9
Samples: 4

Max nTPM: 201.9
Min nTPM: 106.0
Sample A Female 201.9
Sample B Female 161.1
Sample C Male 106.0
Sample D Male 106.5
Entorhinal cortex
nTPM: 135.7
Samples: 4

Max nTPM: 148.9
Min nTPM: 126.9
Sample A Female 148.9
Sample B Female 135.8
Sample C Male 126.9
Sample D Male 131.2
Ventral hippocampus
nTPM: 123.4
Samples: 4

Max nTPM: 160.1
Min nTPM: 73.4
Sample A Female 160.1
Sample B Female 73.4
Sample C Male 127.5
Sample D Male 132.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 230.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 219.5
Samples: 4

Max nTPM: 248.9
Min nTPM: 198.1
Sample A Male 198.1
Sample B Male 219.6
Sample C Female 211.2
Sample D Female 248.9
Hippocampal formation
nTPM: 230.8
Samples: 4

Max nTPM: 244.0
Min nTPM: 200.9
Sample A Male 244.0
Sample B Male 235.3
Sample C Female 242.9
Sample D Female 200.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 18.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 18.3
74581397 Antisense, RP_060117_02_C06, Mouse strain C57BL/6J (56 days, male) 21.0
68196982 Antisense, RP_040928_01_B03, Mouse strain C57BL/6J (56 days, male) 15.6

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