BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3250.3 nTPM
HPA Brain:2633.7 nTPM
GTEx:3250.3 nTPM
FANTOM5:6870.6 Scaled Tags Per Million
Macaque:2356.9 nTPM
Mouse:2391.9 nTPM
Rat:1317.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 2633.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1922.3
2019 Male, age 18, unknown 2384.2
2828 Female, age 72, unknown 2356.6
1833 Male, age 53, unknown 2197.9
1870 Female, age 42, unknown 2160.7
2411 Female, age 72, unknown 2126.8
1830 Male, age 51, unknown 2054.6
2586 Male, age 75, left hemisphere 1807.7
2219 Male, age 76, both hemispheres 1464.1
1827 Male, age 72, unknown 1448.8
2666 Male, age 74, left hemisphere 1221.9
Dorsal raphe nucleus
nTPM: 1863.4
2750 Male, age 76, both hemispheres 2131.9
2016 Female, age 72, unknown 1931.6
2298 Female, age 72, unknown 1824.7
1828 Male, age 53, unknown 1768.6
2047 Male, age 72, unknown 1660.3
Inferior colliculus
nTPM: 1618.2
1890 Male, age 53, unknown 1645.2
1848 Female, age 42, unknown 1633.4
2849 Male, age 72, unknown 1617.4
2097 Female, age 72, unknown 1576.7
Median raphe nucleus
nTPM: 1732.3
2220 Male, age 76, midline 1732.3
Periaquaductal grey, anterior
nTPM: 1537.0
1947 Male, age 18, unknown 1575.5
2502 Female, age 75, unknown 1538.9
1795 Male, age 51, unknown 1496.6
Periaquaductal grey, dorsal
nTPM: 1518.5
2850 Male, age 76, both hemispheres 1720.3
2464 Female, age 72, unknown 1583.8
1831 Male, age 72, unknown 1492.7
1840 Male, age 53, unknown 1277.1
Periaquaductal grey, lateral
nTPM: 1674.9
2140 Male, age 76, both hemispheres 1851.5
2053 Male, age 18, unknown 1599.5
2272 Male, age 74, both hemispheres 1573.6
Pretectal area
nTPM: 1855.0
2667 Female, age 75, unknown 2466.0
1817 Female, age 42, unknown 2136.5
2316 Male, age 76, right hemisphere 2006.4
1815 Male, age 53, unknown 1987.2
2273 Male, age 74, both hemispheres 1982.7
1944 Female, age 72, unknown 1807.3
2007 Male, age 72, unknown 1789.8
2407 Male, age 75, both hemispheres 1746.8
2224 Female, age 72, unknown 1582.5
2825 Male, age 18, unknown 1480.5
1816 Male, age 51, unknown 1419.8
Red nucleus
nTPM: 2633.7
1904 Male, age 53, unknown 3126.3
2823 Male, age 76, right hemisphere 3043.0
2769 Male, age 72, unknown 2975.2
1865 Male, age 51, unknown 2951.4
2227 Male, age 72, unknown 2937.6
1821 Female, age 72, unknown 2856.6
2503 Female, age 72, unknown 2743.4
1954 Female, age 42, unknown 2691.8
2785 Male, age 18, unknown 2685.4
2725 Female, age 75, unknown 2071.5
2588 Male, age 74, left hemisphere 1880.1
2584 Male, age 75, left hemisphere 1642.3
Substantia nigra
nTPM: 1688.6
1889 Female, age 72, unknown 2116.8
1851 Male, age 51, unknown 2061.1
2699 Male, age 18, unknown 2008.7
1916 Female, age 42, unknown 1784.5
2583 Male, age 75, right hemisphere 1716.1
2590 Female, age 75, unknown 1701.2
2409 Female, age 72, unknown 1693.3
1941 Male, age 53, unknown 1401.7
2241 Male, age 72, unknown 1328.5
2665 Male, age 74, both hemispheres 1073.6
Superior colliculus
nTPM: 1833.1
1995 Male, age 72, unknown 2580.6
1913 Female, age 42, unknown 2295.1
2087 Female, age 72, unknown 1850.7
1796 Male, age 53, unknown 1819.4
2587 Male, age 74, left hemisphere 1812.2
1895 Male, age 76, right hemisphere 1768.9
1839 Male, age 51, unknown 1712.3
2668 Female, age 75, unknown 1625.5
2664 Male, age 75, both hemispheres 1444.4
2261 Male, age 18, unknown 1421.4
Ventral tegmental area
nTPM: 1828.8
2223 Female, age 72, unknown 2016.1
2410 Female, age 72, unknown 1980.5
1915 Female, age 42, unknown 1944.8
2218 Male, age 76, both hemispheres 1698.4
2021 Male, age 53, unknown 1696.7
1942 Male, age 51, unknown 1636.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3250.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3250.3
Samples: 183

Max nTPM: 8356.7
Min nTPM: 712.0
Std nTPM: 1325.3
Median nTPM: 3030.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 8356.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 7114.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 6952.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 6834.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 6527.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 6484.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 6350.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 6198.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 6169.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 6143.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 5648.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6870.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6870.6
FF:10158-103A5 76 years, female 6870.6

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 2356.9
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 803.8
Samples: 1

Max nTPM: 803.8
Min nTPM: 803.8
Sample A 803.8
Midbrain
nTPM: 2356.9
Samples: 1

Max nTPM: 2356.9
Min nTPM: 2356.9
Sample A 2356.9
Superior colliculi
nTPM: 981.6
Samples: 1

Max nTPM: 981.6
Min nTPM: 981.6
Sample A 981.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2391.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 2391.9
Samples: 4

Max nTPM: 2723.8
Min nTPM: 1976.8
Sample A 2723.8
Sample B 2368.7
Sample C 2498.1
Sample D 1976.8

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 1317.7
Rat sample Sample description nTPM
Midbrain
nTPM: 1317.7
Samples: 4

Max nTPM: 1527.6
Min nTPM: 990.2
Sample A 1456.5
Sample A 990.2
Sample A 1296.4
Sample A 1527.6

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo