A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
85.0
nTPM
Monaco:
181.6
nTPM
Schmiedel:
122.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.0
HPA sample
nTPM
Classical monocyte nTPM: 85.0
Samples: 6
Max nTPM: 101.3
Min nTPM: 53.8
P10809_1003
101.3
P10809_1020
89.4
P10809_1039
96.3
P10809_1058
53.8
P10809_1080
89.4
P10809_1107
79.8
Intermediate monocyte nTPM: 64.0
Samples: 6
Max nTPM: 105.2
Min nTPM: 48.5
P10809_1004
64.3
P10809_1023
49.3
P10809_1042
55.5
P10809_1061
105.2
P10809_1081
48.5
P10809_1108
61.4
Non-classical monocyte nTPM: 38.2
Samples: 5
Max nTPM: 56.9
Min nTPM: 22.7
P10809_1005
37.5
P10809_1053
25.5
P10809_1072
56.9
P10809_1082
22.7
P10809_1109
48.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
181.6
Monaco sample
nTPM
Classical monocyte nTPM: 181.6
Samples: 4
Max nTPM: 212.4
Min nTPM: 133.9
RHH5313_R3680
184.7
RHH5221_R3593
212.4
RHH5250_R3622
195.5
RHH5279_R3651
133.9
Intermediate monocyte nTPM: 86.0
Samples: 4
Max nTPM: 113.4
Min nTPM: 65.0
RHH5314_R3681
96.7
RHH5222_R3594
113.4
RHH5251_R3623
65.0
RHH5280_R3652
69.0
Non-classical monocyte nTPM: 72.4
Samples: 4
Max nTPM: 108.6
Min nTPM: 43.6
RHH5315_R3682
108.6
RHH5223_R3595
84.6
RHH5252_R3624
52.7
RHH5281_R3653
43.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
122.4
Schmiedel sample id
TPM
Classical monocyte TPM: 122.4
Samples: 91
Max TPM: 185.6
Min TPM: 72.0
MONOCYTES_1
185.6
MONOCYTES_2
177.1
MONOCYTES_3
172.0
MONOCYTES_4
170.8
MONOCYTES_5
170.2
MONOCYTES_6
166.2
MONOCYTES_7
164.7
MONOCYTES_8
162.8
MONOCYTES_9
154.2
MONOCYTES_10
153.8
MONOCYTES_11
150.5
MONOCYTES_12
147.9
MONOCYTES_13
146.8
MONOCYTES_14
146.1
MONOCYTES_15
144.3
MONOCYTES_16
142.4
MONOCYTES_17
141.3
MONOCYTES_18
140.6
MONOCYTES_19
140.4
MONOCYTES_20
140.2
MONOCYTES_21
137.4
MONOCYTES_22
137.4
MONOCYTES_23
136.0
MONOCYTES_24
134.9
MONOCYTES_25
134.0
MONOCYTES_26
133.2
MONOCYTES_27
133.1
MONOCYTES_28
131.1
MONOCYTES_29
130.6
MONOCYTES_30
129.6
MONOCYTES_31
129.2
MONOCYTES_32
129.0
MONOCYTES_33
128.9
MONOCYTES_34
126.8
MONOCYTES_35
126.0
MONOCYTES_36
125.4
MONOCYTES_37
125.3
MONOCYTES_38
125.1
MONOCYTES_39
124.9
MONOCYTES_40
124.4
MONOCYTES_41
123.9
MONOCYTES_42
122.4
MONOCYTES_43
122.4
MONOCYTES_44
122.4
MONOCYTES_45
121.4
MONOCYTES_46
121.4
MONOCYTES_47
121.3
MONOCYTES_48
120.2
MONOCYTES_49
119.4
MONOCYTES_50
118.7
MONOCYTES_51
117.9
MONOCYTES_52
117.7
MONOCYTES_53
115.9
MONOCYTES_54
114.8
MONOCYTES_55
114.5
MONOCYTES_56
113.7
MONOCYTES_57
113.4
MONOCYTES_58
113.0
MONOCYTES_59
111.9
MONOCYTES_60
110.9
MONOCYTES_61
110.8
MONOCYTES_62
110.5
MONOCYTES_63
109.8
MONOCYTES_64
109.5
MONOCYTES_65
106.6
MONOCYTES_66
106.5
MONOCYTES_67
106.5
MONOCYTES_68
105.4
MONOCYTES_69
105.0
MONOCYTES_70
103.2
MONOCYTES_71
102.9
MONOCYTES_72
102.7
MONOCYTES_73
102.6
MONOCYTES_74
102.3
MONOCYTES_75
101.8
MONOCYTES_76
101.6
MONOCYTES_77
100.4
MONOCYTES_78
99.4
MONOCYTES_79
99.2
MONOCYTES_80
96.5
MONOCYTES_81
96.1
MONOCYTES_82
94.2
MONOCYTES_83
93.1
MONOCYTES_84
93.0
MONOCYTES_85
92.6
MONOCYTES_86
91.5
MONOCYTES_87
90.5
MONOCYTES_88
87.6
MONOCYTES_89
84.3
MONOCYTES_90
79.8
MONOCYTES_91
72.0
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Non-classical monocyte TPM: 71.3
Samples: 90
Max TPM: 128.0
Min TPM: 28.6
M2_1
128.0
M2_2
127.5
M2_3
120.3
M2_4
118.6
M2_5
114.4
M2_6
113.6
M2_7
107.8
M2_8
106.2
M2_9
100.1
M2_10
98.7
M2_11
96.9
M2_12
96.1
M2_13
94.9
M2_14
94.2
M2_15
93.2
M2_16
92.9
M2_17
92.6
M2_18
89.9
M2_19
89.3
M2_20
89.2
M2_21
88.0
M2_22
87.8
M2_23
85.3
M2_24
82.4
M2_25
81.1
M2_26
81.0
M2_27
80.4
M2_28
77.3
M2_29
76.3
M2_30
75.5
M2_31
75.3
M2_32
74.0
M2_33
73.5
M2_34
73.1
M2_35
69.8
M2_36
69.6
M2_37
69.5
M2_38
68.8
M2_39
68.1
M2_40
67.9
M2_41
67.9
M2_42
67.6
M2_43
67.5
M2_44
67.3
M2_45
66.8
M2_46
66.5
M2_47
65.7
M2_48
65.3
M2_49
65.0
M2_50
64.7
M2_51
63.6
M2_52
63.4
M2_53
62.7
M2_54
62.3
M2_55
62.2
M2_56
62.0
M2_57
61.7
M2_58
61.4
M2_59
61.3
M2_60
61.1
M2_61
61.1
M2_62
60.8
M2_63
60.4
M2_64
60.3
M2_65
59.7
M2_66
59.3
M2_67
58.5
M2_68
57.9
M2_69
57.1
M2_70
56.3
M2_71
55.3
M2_72
55.2
M2_73
54.1
M2_74
53.9
M2_75
53.4
M2_76
52.7
M2_77
52.3
M2_78
51.6
M2_79
48.4
M2_80
48.2
M2_81
48.1
M2_82
47.7
M2_83
45.8
M2_84
45.4
M2_85
45.1
M2_86
44.1
M2_87
43.5
M2_88
41.5
M2_89
38.1
M2_90
28.6
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