We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CUEDC2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CUEDC2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:74.0 nTPM
FANTOM5:32.7 Scaled Tags Per Million
Pig:58.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA036544
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 74.0
Samples: 300

Max nTPM: 129.8
Min nTPM: 44.0
Std nTPM: 15.5
Median nTPM: 71.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 129.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 126.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 124.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 122.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 119.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 118.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 116.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 116.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 115.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 110.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 109.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 109.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 108.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 108.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 108.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 104.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 101.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 100.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 99.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 99.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 98.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 97.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 96.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 96.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 94.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 94.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 93.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 93.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 92.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 92.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 92.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 92.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 92.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 92.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 92.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 92.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 91.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 91.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 90.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 90.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 90.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 90.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 90.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 89.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 89.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 89.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 89.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 89.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 89.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 88.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 88.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 88.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 88.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 87.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 87.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 86.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 86.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 86.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 86.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 85.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 85.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 85.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 84.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 84.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 84.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 84.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 84.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 83.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 83.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 83.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 83.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 83.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 82.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 81.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 81.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 81.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 81.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 81.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 81.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 81.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 80.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 80.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 80.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 80.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 79.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 79.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 79.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 79.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 79.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 78.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 78.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 78.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 78.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 77.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 77.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 77.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 77.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 77.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 77.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 77.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 77.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 76.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 76.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 76.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 76.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 75.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 75.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 75.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 75.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 75.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 75.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 75.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 75.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 75.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 75.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 75.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 75.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 75.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 75.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 75.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 75.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 75.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 75.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 75.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 75.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 74.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 74.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 74.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 74.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 74.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 74.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 74.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 74.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 73.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 73.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 73.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 73.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 73.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 73.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 73.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 73.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 72.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 72.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 72.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 72.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 72.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 72.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 72.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 71.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 71.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 71.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 71.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 71.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 71.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 71.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 71.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 71.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 71.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 71.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 71.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 71.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 70.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 70.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 70.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 70.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 70.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 70.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 70.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 70.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 69.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 69.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 69.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 69.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 69.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 69.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 69.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 69.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 68.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 68.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 68.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 68.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 68.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 68.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 68.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 68.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 68.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 68.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 68.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 68.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 67.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 67.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 67.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 67.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 67.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 67.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 66.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 66.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 65.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 65.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 65.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 65.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 65.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 65.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 65.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 65.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 65.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 65.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 65.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 65.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 65.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 64.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 64.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 64.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 64.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 64.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 64.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 63.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 63.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 63.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 63.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 63.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 63.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 63.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 62.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 62.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 62.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 62.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 62.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 62.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 62.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 62.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 62.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 62.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 62.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 62.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 62.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 62.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 61.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 61.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 61.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 61.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 61.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 61.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 60.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 60.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 60.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 60.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 60.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 60.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 60.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 60.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 60.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 60.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 60.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 59.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 59.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 59.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 59.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 59.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 58.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 58.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 58.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 58.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 58.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 58.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 58.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 58.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 57.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 57.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 57.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 57.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 57.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 56.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 56.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 56.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 56.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 56.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 55.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 55.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 54.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 53.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 53.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 53.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 53.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 51.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 51.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 51.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 51.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 51.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 50.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 50.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 50.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 49.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 47.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 47.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 46.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 45.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 45.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 44.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 44.0
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

32.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.7
FF:10164-103B2 76 years, female 32.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.4
Pig sample Sample description nTPM
Caudate
nTPM: 58.4
Samples: 4

Max nTPM: 65.0
Min nTPM: 49.8
Sample A Female 57.2
Sample B Female 61.4
Sample C Male 65.0
Sample D Male 49.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo