MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.4 nTPM
HPA Brain:52.9 nTPM
GTEx:77.4 nTPM
FANTOM5:29.0 Scaled Tags Per Million
Pig:74.2 nTPM
Mouse:163.1 nTPM
Allen mouse:10.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 52.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.3
2019 Male, age 18, unknown 58.8
2586 Male, age 75, left hemisphere 57.5
1827 Male, age 72, unknown 52.9
2411 Female, age 72, unknown 52.1
2828 Female, age 72, unknown 48.4
1870 Female, age 42, unknown 46.4
2666 Male, age 74, left hemisphere 46.0
1833 Male, age 53, unknown 41.8
2219 Male, age 76, both hemispheres 39.3
1830 Male, age 51, unknown 39.2
Dorsal raphe nucleus
nTPM: 48.3
2298 Female, age 72, unknown 55.8
2750 Male, age 76, both hemispheres 49.5
1828 Male, age 53, unknown 48.3
2047 Male, age 72, unknown 47.5
2016 Female, age 72, unknown 40.6
Inferior colliculus
nTPM: 44.6
2097 Female, age 72, unknown 52.8
1890 Male, age 53, unknown 46.7
1848 Female, age 42, unknown 43.3
2849 Male, age 72, unknown 35.9
Median raphe nucleus
nTPM: 49.8
2220 Male, age 76, midline 49.8
Periaquaductal grey, anterior
nTPM: 49.4
1795 Male, age 51, unknown 50.8
1947 Male, age 18, unknown 50.0
2502 Female, age 75, unknown 47.5
Periaquaductal grey, dorsal
nTPM: 39.6
2850 Male, age 76, both hemispheres 41.3
1831 Male, age 72, unknown 40.8
2464 Female, age 72, unknown 38.8
1840 Male, age 53, unknown 37.6
Periaquaductal grey, lateral
nTPM: 41.3
2272 Male, age 74, both hemispheres 45.8
2053 Male, age 18, unknown 40.3
2140 Male, age 76, both hemispheres 37.8
Pretectal area
nTPM: 52.9
2007 Male, age 72, unknown 68.3
1817 Female, age 42, unknown 63.7
1816 Male, age 51, unknown 63.5
1944 Female, age 72, unknown 56.2
1815 Male, age 53, unknown 55.5
2667 Female, age 75, unknown 54.0
2273 Male, age 74, both hemispheres 50.6
2407 Male, age 75, both hemispheres 47.5
2224 Female, age 72, unknown 43.2
2316 Male, age 76, right hemisphere 39.9
2825 Male, age 18, unknown 39.3
Red nucleus
nTPM: 52.6
1821 Female, age 72, unknown 65.9
2785 Male, age 18, unknown 59.6
1865 Male, age 51, unknown 56.6
2503 Female, age 72, unknown 56.3
1904 Male, age 53, unknown 55.6
2588 Male, age 74, left hemisphere 52.3
1954 Female, age 42, unknown 51.3
2769 Male, age 72, unknown 50.8
2227 Male, age 72, unknown 48.3
2823 Male, age 76, right hemisphere 46.8
2725 Female, age 75, unknown 45.9
2584 Male, age 75, left hemisphere 41.3
Substantia nigra
nTPM: 49.9
1916 Female, age 42, unknown 65.9
1889 Female, age 72, unknown 56.9
1851 Male, age 51, unknown 56.0
1941 Male, age 53, unknown 55.3
2583 Male, age 75, right hemisphere 48.0
2665 Male, age 74, both hemispheres 47.7
2241 Male, age 72, unknown 47.1
2590 Female, age 75, unknown 43.9
2699 Male, age 18, unknown 43.9
2409 Female, age 72, unknown 34.7
Superior colliculus
nTPM: 48.1
2668 Female, age 75, unknown 61.1
1796 Male, age 53, unknown 53.3
2261 Male, age 18, unknown 51.0
2087 Female, age 72, unknown 50.2
1913 Female, age 42, unknown 47.9
1995 Male, age 72, unknown 46.2
2587 Male, age 74, left hemisphere 44.7
2664 Male, age 75, both hemispheres 43.9
1895 Male, age 76, right hemisphere 42.3
1839 Male, age 51, unknown 40.9
Ventral tegmental area
nTPM: 50.1
2410 Female, age 72, unknown 61.7
1915 Female, age 42, unknown 55.7
2223 Female, age 72, unknown 50.3
2218 Male, age 76, both hemispheres 47.8
1942 Male, age 51, unknown 45.7
2021 Male, age 53, unknown 39.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 77.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.4
Samples: 183

Max nTPM: 125.5
Min nTPM: 44.8
Std nTPM: 14.1
Median nTPM: 75.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 125.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 119.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 117.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 114.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 112.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 110.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 108.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 104.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 104.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 103.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 103.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 29.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.0
FF:10158-103A5 76 years, female 29.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 74.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.0
Samples: 4

Max nTPM: 87.1
Min nTPM: 58.2
Sample A Female 87.1
Sample B Female 69.0
Sample C Male 69.5
Sample D Male 58.2
Midbrain
nTPM: 73.0
Samples: 4

Max nTPM: 93.3
Min nTPM: 64.8
Sample A Female 93.3
Sample B Female 67.9
Sample C Male 65.8
Sample D Male 64.8
Periaqueductal gray
nTPM: 74.2
Samples: 3

Max nTPM: 87.2
Min nTPM: 63.7
Sample B Female 71.7
Sample C Male 87.2
Sample D Male 63.7
Superior colliculi
nTPM: 73.9
Samples: 4

Max nTPM: 85.3
Min nTPM: 63.1
Sample A Female 85.3
Sample B Female 63.1
Sample C Male 75.7
Sample D Male 71.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 163.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 163.1
Samples: 4

Max nTPM: 183.3
Min nTPM: 146.0
Sample A Male 183.3
Sample B Male 151.4
Sample C Female 146.0
Sample D Female 171.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.1
71608215 Antisense, RP_050927_01_B11, Mouse strain C57BL/6J (56 days, male) 11.2
79556640 Antisense, RP_071204_01_A04, Mouse strain C57BL/6J (56 days, male) 9.1

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