MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1254.9 nTPM
HPA Brain:462.1 nTPM
GTEx:1254.9 nTPM
FANTOM5:504.0 Scaled Tags Per Million
Pig:156.3 nTPM
Mouse:128.3 nTPM
Allen mouse:10.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 462.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 426.8
2586 Male, age 75, left hemisphere 550.3
2666 Male, age 74, left hemisphere 505.7
1870 Female, age 42, unknown 483.9
2411 Female, age 72, unknown 424.9
1830 Male, age 51, unknown 424.8
1833 Male, age 53, unknown 409.2
2828 Female, age 72, unknown 405.0
1827 Male, age 72, unknown 366.0
2219 Male, age 76, both hemispheres 363.0
2019 Male, age 18, unknown 335.1
Dorsal raphe nucleus
nTPM: 408.1
2750 Male, age 76, both hemispheres 448.5
2047 Male, age 72, unknown 424.6
2016 Female, age 72, unknown 399.1
1828 Male, age 53, unknown 398.3
2298 Female, age 72, unknown 369.9
Inferior colliculus
nTPM: 402.1
2849 Male, age 72, unknown 454.1
1848 Female, age 42, unknown 413.3
1890 Male, age 53, unknown 412.7
2097 Female, age 72, unknown 328.2
Median raphe nucleus
nTPM: 455.4
2220 Male, age 76, midline 455.4
Periaquaductal grey, anterior
nTPM: 455.4
2502 Female, age 75, unknown 511.5
1947 Male, age 18, unknown 441.4
1795 Male, age 51, unknown 413.1
Periaquaductal grey, dorsal
nTPM: 390.4
2850 Male, age 76, both hemispheres 429.9
1840 Male, age 53, unknown 410.0
1831 Male, age 72, unknown 363.9
2464 Female, age 72, unknown 357.8
Periaquaductal grey, lateral
nTPM: 385.7
2053 Male, age 18, unknown 434.5
2272 Male, age 74, both hemispheres 362.6
2140 Male, age 76, both hemispheres 360.1
Pretectal area
nTPM: 357.2
2825 Male, age 18, unknown 402.4
2407 Male, age 75, both hemispheres 397.9
2007 Male, age 72, unknown 389.6
1817 Female, age 42, unknown 387.5
2224 Female, age 72, unknown 369.0
1815 Male, age 53, unknown 367.6
2316 Male, age 76, right hemisphere 352.6
1944 Female, age 72, unknown 334.4
1816 Male, age 51, unknown 321.0
2667 Female, age 75, unknown 310.5
2273 Male, age 74, both hemispheres 296.3
Red nucleus
nTPM: 450.2
2503 Female, age 72, unknown 561.4
2584 Male, age 75, left hemisphere 496.5
1865 Male, age 51, unknown 488.2
2769 Male, age 72, unknown 472.6
2227 Male, age 72, unknown 471.2
1904 Male, age 53, unknown 468.8
2725 Female, age 75, unknown 443.6
1821 Female, age 72, unknown 435.2
2588 Male, age 74, left hemisphere 411.2
2785 Male, age 18, unknown 409.9
1954 Female, age 42, unknown 397.9
2823 Male, age 76, right hemisphere 345.3
Substantia nigra
nTPM: 462.1
2699 Male, age 18, unknown 627.1
1851 Male, age 51, unknown 557.4
2665 Male, age 74, both hemispheres 509.8
1916 Female, age 42, unknown 495.7
2590 Female, age 75, unknown 452.0
2409 Female, age 72, unknown 448.1
2583 Male, age 75, right hemisphere 423.2
1889 Female, age 72, unknown 404.0
1941 Male, age 53, unknown 389.2
2241 Male, age 72, unknown 314.6
Superior colliculus
nTPM: 413.9
1995 Male, age 72, unknown 501.8
1913 Female, age 42, unknown 484.3
2587 Male, age 74, left hemisphere 472.3
1796 Male, age 53, unknown 453.6
2664 Male, age 75, both hemispheres 437.8
2668 Female, age 75, unknown 419.5
1839 Male, age 51, unknown 396.9
1895 Male, age 76, right hemisphere 344.4
2261 Male, age 18, unknown 325.9
2087 Female, age 72, unknown 302.2
Ventral tegmental area
nTPM: 459.5
2223 Female, age 72, unknown 525.2
2410 Female, age 72, unknown 493.2
1915 Female, age 42, unknown 456.7
2021 Male, age 53, unknown 429.7
2218 Male, age 76, both hemispheres 428.0
1942 Male, age 51, unknown 424.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1254.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1254.9
Samples: 183

Max nTPM: 3512.9
Min nTPM: 391.5
Std nTPM: 514.5
Median nTPM: 1194.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 3512.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2990.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2901.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2884.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2700.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2576.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2316.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 2268.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 2249.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 2215.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2188.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 504.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 504.0
FF:10158-103A5 76 years, female 504.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 156.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 147.2
Samples: 4

Max nTPM: 190.1
Min nTPM: 121.6
Sample A Female 190.1
Sample B Female 142.1
Sample C Male 121.6
Sample D Male 134.9
Midbrain
nTPM: 155.8
Samples: 4

Max nTPM: 236.8
Min nTPM: 118.2
Sample A Female 236.8
Sample B Female 141.1
Sample C Male 127.2
Sample D Male 118.2
Periaqueductal gray
nTPM: 132.6
Samples: 3

Max nTPM: 151.4
Min nTPM: 121.8
Sample B Female 121.8
Sample C Male 151.4
Sample D Male 124.7
Superior colliculi
nTPM: 156.3
Samples: 4

Max nTPM: 193.2
Min nTPM: 137.2
Sample A Female 193.2
Sample B Female 137.2
Sample C Male 143.5
Sample D Male 151.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 128.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.3
Samples: 4

Max nTPM: 147.7
Min nTPM: 116.2
Sample A Male 147.7
Sample B Male 116.3
Sample C Female 116.2
Sample D Female 133.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.6
69173436 Antisense, RP_050329_01_E12, Mouse strain C57BL/6J (56 days, male) 10.6

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