RPL28
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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

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  • CELL LINE

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  • EVOLUTION

  • RPL28
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:463.6 nTPM
GTEx:1254.9 nTPM
FANTOM5:504.0 Scaled Tags Per Million
Macaque:126.5 nTPM
Pig:151.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

463.6
Sample id Sample description nTPM
Substantia nigra
nTPM: 463.6
2699 Male, age 18, unknown 629.6
1851 Male, age 51, unknown 559.5
2665 Male, age 74, both hemispheres 512.1
1916 Female, age 42, unknown 497.8
2590 Female, age 75, unknown 453.4
2409 Female, age 72, unknown 449.5
2583 Male, age 75, right hemisphere 422.7
1889 Female, age 72, unknown 405.6
1941 Male, age 53, unknown 390.6
2241 Male, age 72, unknown 315.6

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1254.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1254.9
Samples: 183

Max nTPM: 3512.9
Min nTPM: 391.5
Std nTPM: 514.5
Median nTPM: 1194.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 3512.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2990.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2901.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2884.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2700.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2576.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2316.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 2268.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 2249.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 2215.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2188.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 2172.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2094.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2084.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 2065.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2032.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 2025.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 2010.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1998.6
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 1918.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1885.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1853.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1828.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1805.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1794.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1704.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1693.1
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 1683.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1676.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1668.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1654.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 1634.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1618.1
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 1602.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1593.5
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 1586.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1577.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1535.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1531.1
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 1527.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 1527.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 1510.4
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 1500.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 1494.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 1490.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1478.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1470.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1462.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1461.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1446.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1443.7
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 1440.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 1426.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 1393.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 1388.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1385.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1374.1
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 1369.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1352.2
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 1349.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1346.9
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 1339.0
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 1338.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 1332.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1331.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1328.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1323.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 1317.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 1304.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1303.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1302.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1297.8
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 1293.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1293.2
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 1293.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1279.7
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 1279.6
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 1277.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 1271.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 1270.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1262.9
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 1253.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1252.8
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 1243.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1224.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 1224.2
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 1224.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1218.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1216.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 1199.2
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 1195.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1194.5
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 1185.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 1183.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1181.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 1165.1
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 1151.4
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 1149.7
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 1148.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1140.5
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 1138.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 1122.2
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 1116.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1115.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1091.3
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 1068.2
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 1051.5
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 1042.0
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 1040.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 1022.4
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 1006.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 1004.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 1000.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 999.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 993.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 983.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 982.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 971.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 968.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 967.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 963.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 958.4
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 948.4
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 944.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 926.1
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 922.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 919.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 904.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 904.0
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 898.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 898.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 892.5
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 891.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 879.3
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 879.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 874.0
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 871.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 869.3
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 859.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 854.5
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 848.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 848.2
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 844.4
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 839.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 837.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 836.5
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 832.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 816.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 807.8
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 799.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 799.3
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 795.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 791.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 788.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 788.0
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 787.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 781.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 775.6
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 770.2
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 769.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 764.8
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 756.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 753.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 750.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 742.7
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 742.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 738.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 731.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 725.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 719.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 709.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 704.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 704.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 702.4
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 701.6
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 674.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 613.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 541.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 533.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 526.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 488.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 467.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 391.5
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

504.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 504.0
FF:10158-103A5 76 years, female 504.0

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.5
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 126.5
Samples: 1

Max nTPM: 126.5
Min nTPM: 126.5
Sample A 126.5

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 151.9
Samples: 3

Max nTPM: 191.2
Min nTPM: 121.9
Sample A Female 191.2
Sample B Female 142.6
Sample C Male 121.9

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