HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:1165.1 nTPM
HPA Brain:460.4 nTPM
GTEx:1165.1 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Pig:12.4 nTPM
Mouse:1002.4 nTPM
Allen mouse:24.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043014
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 460.4
Sample id Sample description nTPM
Hippocampus
nTPM: 460.4
2529 Female, age 94, left hemisphere 567.9
1898 Male, age 80, left hemisphere 483.3
2621 Female, age 67, right hemisphere 482.9
1855 Male, age 76, left hemisphere 426.5
1911 Female, age 85, right hemisphere 404.6
2148 Female, age 91, left hemisphere 397.5
Dentate gyrus
nTPM: 440.3
2530 Female, age 94, left hemisphere 619.8
2010 Male, age 76, both hemispheres 474.3
2531 Female, age 67, both hemispheres 430.9
2246 Female, age 85, both hemispheres 416.8
2528 Male, age 74, both hemispheres 350.7
1927 Female, age 91, both hemispheres 349.4
Entorhinal gyrus
nTPM: 438.7
2686 Male, age 75, right hemisphere 510.5
2117 Female, age 91, right hemisphere 492.8
1787 Male, age 76, left hemisphere 461.7
2764 Male, age 80, right hemisphere 419.9
1938 Female, age 85, left hemisphere 400.7
2613 Female, age 94, left hemisphere 347.0
Hippocampus, CA1
nTPM: 411.8
2749 Male, age 80, left hemisphere 427.2
2082 Female, age 91, right hemisphere 421.9
2045 Male, age 76, both hemispheres 421.8
2527 Male, age 74, both hemispheres 404.5
1873 Female, age 85, both hemispheres 383.7
Hippocampus, CA2
nTPM: 419.5
1963 Male, age 80, left hemisphere 469.3
2437 Female, age 94, left hemisphere 435.4
2113 Female, age 91, right hemisphere 419.6
1892 Male, age 76, both hemispheres 416.0
1940 Female, age 85, left hemisphere 402.6
2249 Male, age 74, both hemispheres 374.0
Hippocampus, CA3
nTPM: 380.7
1867 Male, age 76, both hemispheres 429.0
1891 Female, age 85, both hemispheres 424.2
2861 Female, age 67, both hemispheres 404.3
2137 Male, age 80, left hemisphere 379.2
2436 Male, age 74, both hemispheres 367.2
2620 Female, age 94, left hemisphere 280.4
Parahippocampal cortex
nTPM: 390.9
2018 Male, age 76, both hemispheres 467.6
2245 Female, age 91, both hemispheres 449.4
2532 Female, age 72, left hemisphere 446.0
1850 Male, age 80, both hemispheres 401.7
2250 Female, age 67, right hemisphere 401.6
2692 Male, age 74, both hemispheres 394.7
1933 Female, age 85, both hemispheres 376.7
1990 Female, age 91, right hemisphere 369.4
2622 Female, age 67, right hemisphere 327.6
2693 Female, age 94, both hemispheres 274.1
Perirhinal gyrus
nTPM: 377.4
1794 Male, age 80, right hemisphere 400.8
1847 Female, age 91, left hemisphere 391.3
1841 Female, age 85, right hemisphere 382.1
2521 Female, age 94, right hemisphere 361.2
2848 Male, age 76, right hemisphere 351.5
Subiculum
nTPM: 445.6
2042 Male, age 76, both hemispheres 519.5
1977 Female, age 85, both hemispheres 463.8
2438 Female, age 94, left hemisphere 461.0
1901 Male, age 80, both hemispheres 455.1
2619 Male, age 74, both hemispheres 402.9
2729 Female, age 91, right hemisphere 371.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 1165.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1165.1
Samples: 255

Max nTPM: 2866.7
Min nTPM: 548.6
Std nTPM: 372.6
Median nTPM: 1092.5
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 2866.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 2750.0
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 2693.9
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 2408.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 2383.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 2249.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 2134.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 2083.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 2004.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 1979.8
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 1925.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.7
FF:10169-103B7 60 years, female 32.1
FF:10153-102I9 76 years, female 21.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 12.4
Pig sample Sample description nTPM
Subiculum
nTPM: 10.3
Samples: 4

Max nTPM: 12.6
Min nTPM: 6.2
Sample A Female 6.2
Sample B Female 12.6
Sample C Male 10.2
Sample D Male 12.0
Dorsal hippocampus
nTPM: 12.4
Samples: 4

Max nTPM: 17.7
Min nTPM: 10.4
Sample A Female 10.4
Sample B Female 10.5
Sample C Male 17.7
Sample D Male 11.0
Entorhinal cortex
nTPM: 7.5
Samples: 4

Max nTPM: 8.4
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 8.1
Sample C Male 6.7
Sample D Male 8.4
Ventral hippocampus
nTPM: 11.8
Samples: 4

Max nTPM: 16.0
Min nTPM: 5.0
Sample A Female 16.0
Sample B Female 12.6
Sample C Male 5.0
Sample D Male 13.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 1002.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 977.1
Samples: 4

Max nTPM: 1037.0
Min nTPM: 933.5
Sample A Male 948.5
Sample B Male 989.5
Sample C Female 1037.0
Sample D Female 933.5
Hippocampal formation
nTPM: 1002.4
Samples: 4

Max nTPM: 1156.0
Min nTPM: 914.3
Sample A Male 1156.0
Sample B Male 914.3
Sample C Female 943.1
Sample D Female 996.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 24.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 24.8
100143495 Antisense, RP_110407_01_F05, Mouse strain C57BL/6J (56 days, male) 24.8

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