MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1468.5 nTPM
HPA Brain:591.7 nTPM
GTEx:1468.5 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:17.5 nTPM
Mouse:867.2 nTPM
Allen mouse:22.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 591.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 519.2
2666 Male, age 74, left hemisphere 604.1
2586 Male, age 75, left hemisphere 556.8
1870 Female, age 42, unknown 544.3
1830 Male, age 51, unknown 534.6
2828 Female, age 72, unknown 530.4
2411 Female, age 72, unknown 507.0
2019 Male, age 18, unknown 504.0
1833 Male, age 53, unknown 499.0
1827 Male, age 72, unknown 458.5
2219 Male, age 76, both hemispheres 453.0
Dorsal raphe nucleus
nTPM: 499.1
2750 Male, age 76, both hemispheres 556.1
2016 Female, age 72, unknown 507.0
2298 Female, age 72, unknown 504.7
1828 Male, age 53, unknown 492.4
2047 Male, age 72, unknown 435.2
Inferior colliculus
nTPM: 472.0
1890 Male, age 53, unknown 499.5
2849 Male, age 72, unknown 476.4
2097 Female, age 72, unknown 471.9
1848 Female, age 42, unknown 440.2
Median raphe nucleus
nTPM: 569.3
2220 Male, age 76, midline 569.3
Periaquaductal grey, anterior
nTPM: 504.0
2502 Female, age 75, unknown 583.7
1947 Male, age 18, unknown 471.8
1795 Male, age 51, unknown 456.5
Periaquaductal grey, dorsal
nTPM: 465.4
2850 Male, age 76, both hemispheres 502.5
1840 Male, age 53, unknown 469.0
1831 Male, age 72, unknown 466.6
2464 Female, age 72, unknown 423.6
Periaquaductal grey, lateral
nTPM: 482.3
2272 Male, age 74, both hemispheres 503.1
2053 Male, age 18, unknown 475.4
2140 Male, age 76, both hemispheres 468.4
Pretectal area
nTPM: 468.0
1817 Female, age 42, unknown 513.3
2316 Male, age 76, right hemisphere 512.0
1815 Male, age 53, unknown 504.9
2825 Male, age 18, unknown 495.3
2224 Female, age 72, unknown 476.0
2007 Male, age 72, unknown 464.6
2273 Male, age 74, both hemispheres 459.5
2407 Male, age 75, both hemispheres 455.1
1944 Female, age 72, unknown 442.2
1816 Male, age 51, unknown 433.3
2667 Female, age 75, unknown 391.5
Red nucleus
nTPM: 591.7
2503 Female, age 72, unknown 753.1
1865 Male, age 51, unknown 659.7
1904 Male, age 53, unknown 612.3
1821 Female, age 72, unknown 601.2
2725 Female, age 75, unknown 596.8
2227 Male, age 72, unknown 588.4
2769 Male, age 72, unknown 586.3
2588 Male, age 74, left hemisphere 568.4
2785 Male, age 18, unknown 549.4
2584 Male, age 75, left hemisphere 549.2
1954 Female, age 42, unknown 540.1
2823 Male, age 76, right hemisphere 495.1
Substantia nigra
nTPM: 583.7
2699 Male, age 18, unknown 736.0
1851 Male, age 51, unknown 671.3
2665 Male, age 74, both hemispheres 644.6
2241 Male, age 72, unknown 630.6
1916 Female, age 42, unknown 615.2
2590 Female, age 75, unknown 544.0
2409 Female, age 72, unknown 534.2
1941 Male, age 53, unknown 527.6
1889 Female, age 72, unknown 482.6
2583 Male, age 75, right hemisphere 450.5
Superior colliculus
nTPM: 518.3
2587 Male, age 74, left hemisphere 625.4
1913 Female, age 42, unknown 621.4
1995 Male, age 72, unknown 602.5
2668 Female, age 75, unknown 549.6
1839 Male, age 51, unknown 501.0
1796 Male, age 53, unknown 493.4
2664 Male, age 75, both hemispheres 467.3
2261 Male, age 18, unknown 449.1
2087 Female, age 72, unknown 445.8
1895 Male, age 76, right hemisphere 427.0
Ventral tegmental area
nTPM: 569.8
2223 Female, age 72, unknown 638.7
1915 Female, age 42, unknown 636.8
2021 Male, age 53, unknown 562.5
2410 Female, age 72, unknown 543.8
2218 Male, age 76, both hemispheres 526.8
1942 Male, age 51, unknown 510.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1468.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1468.5
Samples: 183

Max nTPM: 3252.7
Min nTPM: 574.8
Std nTPM: 475.3
Median nTPM: 1382.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3252.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3025.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2994.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2722.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2718.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 2514.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 2464.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 2355.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 2345.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2311.3
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 2260.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.5
FF:10158-103A5 76 years, female 18.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.1
Samples: 4

Max nTPM: 22.5
Min nTPM: 8.3
Sample A Female 8.3
Sample B Female 10.8
Sample C Male 10.7
Sample D Male 22.5
Midbrain
nTPM: 14.1
Samples: 4

Max nTPM: 16.6
Min nTPM: 11.7
Sample A Female 11.7
Sample B Female 16.6
Sample C Male 14.0
Sample D Male 13.9
Periaqueductal gray
nTPM: 17.5
Samples: 3

Max nTPM: 21.5
Min nTPM: 9.7
Sample B Female 21.3
Sample C Male 9.7
Sample D Male 21.5
Superior colliculi
nTPM: 12.4
Samples: 4

Max nTPM: 16.5
Min nTPM: 6.3
Sample A Female 6.3
Sample B Female 15.5
Sample C Male 16.5
Sample D Male 11.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 867.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 867.2
Samples: 4

Max nTPM: 973.5
Min nTPM: 788.9
Sample A Male 973.5
Sample B Male 819.9
Sample C Female 788.9
Sample D Female 886.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 22.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.4
100143495 Antisense, RP_110407_01_F05, Mouse strain C57BL/6J (56 days, male) 22.4

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