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BETA
  • SUMMARY

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  • EVOLUTION

  • RUNDC3A
EVOLUTIONARY HIPPOCAMPAL FORMATION Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Protein evolution
Brain
Evolutionary methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Neuronal projections: High
Synapses: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

83.953
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:241.1 nTPM
HPA Brain:263.4 nTPM
GTEx:241.1 nTPM
FANTOM5:117.9 Scaled Tags Per Million
Macaque:135.9 nTPM
Mouse:252.3 nTPM
Rat:175.7 nTPM
Pig:268.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA023548
Glial cells Not detected
Neuronal cells Not detected
Neuronal projections High
Synapses Not detected

HIPPOCAMPUS - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA070733
Glial cells Not detected
Neuronal cells Not detected
Neuronal projections High
Synapses Not detected

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA023548Antibody HPA070733
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody HPA023548
Hippocampal formation mean intensity 83.953
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Polymorph layer of the dentate gyrus 81.021
Molecular layer of the dentate gyrus 35.007
Granular dentate gyrus 63.724
CA1 - oriens layer 38.555
CA1 - pyramidal layer 62.882
CA1 - radiatum layer 45.269
CA2 - oriens layer 42.197
CA2 - pyramidal layer 70.561
CA2 - radiatum layer 47.229
CA3 - oriens layer 46.603
CA3 - pyramidal layer 83.953
CA3 - radiatum layer 51.753
Stratum lucidum 67.786
Lacunosum moleculare 33.498
Subiculum 73.197

HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 8215
Sample Intensity
Hippocampal formation_01
6781
Hippocampal formation_02
8194
Hippocampal formation_03
2644
Hippocampal formation_04
14927
Hippocampal formation_05
10214
Hippocampal formation_06
8237

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

263.4
Sample id Sample description nTPM
Dentate gyrus
nTPM: 253.3
2531 Female, age 67, both hemispheres 335.7
1927 Female, age 91, both hemispheres 293.8
2530 Female, age 94, left hemisphere 282.9
2528 Male, age 74, both hemispheres 214.1
2246 Female, age 85, both hemispheres 199.6
2010 Male, age 76, both hemispheres 193.4
Entorhinal gyrus
nTPM: 190.3
2613 Female, age 94, left hemisphere 237.1
2764 Male, age 80, right hemisphere 224.7
1787 Male, age 76, left hemisphere 200.5
1938 Female, age 85, left hemisphere 184.9
2686 Male, age 75, right hemisphere 164.2
2117 Female, age 91, right hemisphere 130.5
Hippocampus, CA1
nTPM: 260.7
2749 Male, age 80, left hemisphere 394.7
2527 Male, age 74, both hemispheres 258.6
1873 Female, age 85, both hemispheres 222.4
2082 Female, age 91, right hemisphere 216.7
2045 Male, age 76, both hemispheres 211.1
Hippocampus, CA2
nTPM: 242.7
1963 Male, age 80, left hemisphere 333.0
1892 Male, age 76, both hemispheres 248.2
2437 Female, age 94, left hemisphere 242.1
2113 Female, age 91, right hemisphere 240.1
1940 Female, age 85, left hemisphere 209.8
2249 Male, age 74, both hemispheres 182.9
Hippocampus, CA3
nTPM: 260.3
2137 Male, age 80, left hemisphere 366.6
2861 Female, age 67, both hemispheres 364.4
2620 Female, age 94, left hemisphere 300.1
1867 Male, age 76, both hemispheres 190.5
2436 Male, age 74, both hemispheres 182.5
1891 Female, age 85, both hemispheres 157.7
Parahippocampal cortex
nTPM: 212.7
2245 Female, age 91, both hemispheres 327.6
2250 Female, age 67, right hemisphere 245.5
2622 Female, age 67, right hemisphere 223.4
1850 Male, age 80, both hemispheres 218.9
1990 Female, age 91, right hemisphere 202.0
1933 Female, age 85, both hemispheres 197.5
2693 Female, age 94, both hemispheres 197.4
2532 Female, age 72, left hemisphere 188.3
2018 Male, age 76, both hemispheres 185.7
2692 Male, age 74, both hemispheres 141.1
Perirhinal gyrus
nTPM: 263.4
2521 Female, age 94, right hemisphere 317.1
1847 Female, age 91, left hemisphere 304.0
1794 Male, age 80, right hemisphere 283.0
1841 Female, age 85, right hemisphere 223.4
2848 Male, age 76, right hemisphere 189.2
Subiculum
nTPM: 172.2
1901 Male, age 80, both hemispheres 192.0
2729 Female, age 91, right hemisphere 190.8
1977 Female, age 85, both hemispheres 184.5
2438 Female, age 94, left hemisphere 166.6
2619 Male, age 74, both hemispheres 163.1
2042 Male, age 76, both hemispheres 136.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

241.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 241.1
Samples: 255

Max nTPM: 893.1
Min nTPM: 18.6
Std nTPM: 126.3
Median nTPM: 242.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 893.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 612.7
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 598.3
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 571.5
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 567.4
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 521.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 493.2
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 479.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 477.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 475.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 467.8
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 466.8
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 465.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 459.7
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 455.9
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 455.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 455.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 442.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 440.5
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 439.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 431.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 424.8
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 415.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 407.1
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 399.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 395.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 393.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 393.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 383.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 380.3
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 376.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 376.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 371.8
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 361.3
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 360.2
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 358.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 357.6
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 356.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 355.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 354.9
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 354.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 353.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 349.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 345.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 343.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 343.5
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 342.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 339.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 335.6
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 334.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 333.4
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 333.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 333.3
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 330.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 328.0
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 326.2
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 324.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 324.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 320.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 319.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 316.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 316.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 315.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 315.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 313.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 311.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 311.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 310.4
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 307.3
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 307.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 305.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 304.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 300.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 300.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 300.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 297.2
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 297.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 296.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 295.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 295.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 294.4
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 292.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 288.5
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 287.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 284.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 282.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 279.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 275.7
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 273.8
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 271.9
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 268.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 267.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 266.7
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 264.8
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 264.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 264.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 264.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 264.1
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 263.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 262.2
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 262.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 259.8
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 258.0
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 256.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 255.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 255.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 254.8
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 254.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 254.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 254.0
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 251.9
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 251.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 251.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 251.0
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 250.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 249.9
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 249.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 248.7
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 248.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 248.1
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 247.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 247.8
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 245.5
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 245.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 245.2
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 244.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 242.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 242.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 242.1
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 240.7
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 235.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 232.9
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 232.4
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 230.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 230.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 229.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 228.5
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 227.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 227.1
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 226.5
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 226.4
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 225.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 223.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 221.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 220.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 220.6
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 219.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 218.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 216.0
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 214.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 213.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 213.0
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 210.4
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 208.9
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 208.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 204.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 204.2
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 201.6
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 200.9
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 200.8
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 197.5
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 195.3
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 190.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 189.8
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 189.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 189.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 186.1
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 185.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 185.5
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 184.8
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 182.3
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 179.2
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 178.2
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 177.5
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 176.3
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 173.3
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 170.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 161.9
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 160.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 158.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 157.6
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 157.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 155.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 155.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 153.1
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 153.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 152.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 151.4
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 150.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 150.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 148.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 148.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 148.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 147.7
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 147.2
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 145.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 142.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 142.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 141.4
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 140.3
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 137.5
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 137.4
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 136.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 135.8
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 135.2
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 134.1
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 133.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 125.3
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 124.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 119.6
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 117.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 117.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 116.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 115.3
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 113.2
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 111.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 104.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 92.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 90.1
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 86.8
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 85.9
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 85.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 85.2
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 85.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 83.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 83.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 83.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 78.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 78.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 76.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 75.8
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 75.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 74.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 66.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 65.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 65.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 65.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 62.8
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 60.7
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 60.5
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 60.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 59.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 57.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 51.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 50.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 50.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 49.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 48.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 48.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 46.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 45.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 42.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 38.5
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 27.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 18.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

117.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 117.9
FF:10169-103B7 60 years, female 135.0
FF:10153-102I9 76 years, female 100.8

HIPPOCAMPAL FORMATION - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.9
Macaque sample Sample description nTPM
Subiculum
nTPM: 103.8
Samples: 1

Max nTPM: 103.8
Min nTPM: 103.8
Sample A 103.8
Entorhinal cortex
nTPM: 135.9
Samples: 2

Max nTPM: 140.5
Min nTPM: 131.3
Sample A 131.3
Sample B 140.5
Hippocampal formation
nTPM: 135.5
Samples: 4

Max nTPM: 157.5
Min nTPM: 117.5
Sample A 131.1
Sample B 117.5
Sample C 135.7
Sample D 157.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

268.0
Pig sample Sample description nTPM
Subiculum
nTPM: 205.9
Samples: 4

Max nTPM: 295.9
Min nTPM: 164.3
Sample A Female 295.9
Sample B Female 191.6
Sample C Male 171.7
Sample D Male 164.3
Dorsal hippocampus
nTPM: 205.4
Samples: 4

Max nTPM: 253.7
Min nTPM: 143.0
Sample A Female 253.7
Sample B Female 211.7
Sample C Male 213.2
Sample D Male 143.0
Entorhinal cortex
nTPM: 268.0
Samples: 4

Max nTPM: 305.0
Min nTPM: 233.3
Sample A Female 239.8
Sample B Female 294.0
Sample C Male 305.0
Sample D Male 233.3
Ventral hippocampus
nTPM: 183.6
Samples: 4

Max nTPM: 212.0
Min nTPM: 144.2
Sample A Female 170.9
Sample B Female 144.2
Sample C Male 207.3
Sample D Male 212.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

252.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 252.3
Samples: 4

Max nTPM: 268.1
Min nTPM: 233.5
Sample A 252.2
Sample B 268.1
Sample C 255.5
Sample D 233.5
Hippocampal formation
nTPM: 235.1
Samples: 4

Max nTPM: 288.6
Min nTPM: 201.1
Sample A 288.6
Sample B 234.0
Sample C 201.1
Sample D 216.5

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.7
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 168.4
Samples: 4

Max nTPM: 181.9
Min nTPM: 156.0
Sample A 181.9
Sample A 174.6
Sample A 156.0
Sample B 161.0
Ventral hippocampus
nTPM: 175.8
Samples: 4

Max nTPM: 182.9
Min nTPM: 156.2
Sample A 181.3
Sample A 156.2
Sample A 182.6
Sample A 182.9

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