A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.0
nTPM
Monaco:
43.3
nTPM
Schmiedel:
26.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.0
HPA sample
nTPM
NK-cell nTPM: 4.1
Samples: 6
Max nTPM: 7.9
Min nTPM: 0.0
P10809_1013
4.1
P10809_1033
7.9
P10809_1052
7.3
P10809_1071
0.0
P10809_1093
0.0
P10809_1103
5.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.3
Monaco sample
nTPM
NK-cell nTPM: 43.3
Samples: 4
Max nTPM: 56.0
Min nTPM: 31.1
RHH5316_R3683
56.0
RHH5224_R3596
31.1
RHH5253_R3625
44.3
RHH5282_R3654
42.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.2
Schmiedel sample id
TPM
NK-cell TPM: 26.2
Samples: 90
Max TPM: 68.7
Min TPM: 11.9
NK_1
68.7
NK_2
53.5
NK_3
47.8
NK_4
47.4
NK_5
43.4
NK_6
42.7
NK_7
42.4
NK_8
40.6
NK_9
40.2
NK_10
40.1
NK_11
37.7
NK_12
35.5
NK_13
35.4
NK_14
35.1
NK_15
34.2
NK_16
33.9
NK_17
33.6
NK_18
33.4
NK_19
33.2
NK_20
33.1
NK_21
32.0
NK_22
31.6
NK_23
31.4
NK_24
31.1
NK_25
30.9
NK_26
30.3
NK_27
30.2
NK_28
30.1
NK_29
29.9
NK_30
29.2
NK_31
29.1
NK_32
28.8
NK_33
27.5
NK_34
27.1
NK_35
26.5
NK_36
25.6
NK_37
25.3
NK_38
25.2
NK_39
25.0
NK_40
24.5
NK_41
24.4
NK_42
24.2
NK_43
24.1
NK_44
24.1
NK_45
23.9
NK_46
23.9
NK_47
23.8
NK_48
23.6
NK_49
23.2
NK_50
23.1
NK_51
23.1
NK_52
22.3
NK_53
22.3
NK_54
22.3
NK_55
22.2
NK_56
22.2
NK_57
22.1
NK_58
22.0
NK_59
21.9
NK_60
21.5
NK_61
21.5
NK_62
20.9
NK_63
20.8
NK_64
20.8
NK_65
20.6
NK_66
20.4
NK_67
20.4
NK_68
20.0
NK_69
20.0
NK_70
19.1
NK_71
18.8
NK_72
18.5
NK_73
18.2
NK_74
17.9
NK_75
17.4
NK_76
17.3
NK_77
17.2
NK_78
17.1
NK_79
16.6
NK_80
16.2
NK_81
15.3
NK_82
14.9
NK_83
14.9
NK_84
14.5
NK_85
13.3
NK_86
13.2
NK_87
12.9
NK_88
12.4
NK_89
12.3
NK_90
11.9
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