BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:95.2 nTPM
HPA Brain:106.2 nTPM
GTEx:95.2 nTPM
FANTOM5:38.3 Scaled Tags Per Million
Macaque:113.4 nTPM
Mouse:246.4 nTPM
Rat:210.1 nTPM
Pig:181.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 106.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.3
2586 Male, age 75, left hemisphere 156.5
1833 Male, age 53, unknown 82.7
2411 Female, age 72, unknown 82.3
2666 Male, age 74, left hemisphere 78.2
1870 Female, age 42, unknown 75.6
1830 Male, age 51, unknown 73.3
1827 Male, age 72, unknown 72.1
2219 Male, age 76, both hemispheres 62.0
2019 Male, age 18, unknown 60.4
2828 Female, age 72, unknown 59.8
Dorsal raphe nucleus
nTPM: 106.2
2047 Male, age 72, unknown 119.8
2298 Female, age 72, unknown 116.0
1828 Male, age 53, unknown 110.5
2016 Female, age 72, unknown 106.9
2750 Male, age 76, both hemispheres 78.0
Inferior colliculus
nTPM: 96.0
2849 Male, age 72, unknown 120.0
1890 Male, age 53, unknown 90.5
1848 Female, age 42, unknown 87.9
2097 Female, age 72, unknown 85.7
Median raphe nucleus
nTPM: 84.0
2220 Male, age 76, midline 84.0
Periaquaductal grey, anterior
nTPM: 74.3
1947 Male, age 18, unknown 76.8
1795 Male, age 51, unknown 73.6
2502 Female, age 75, unknown 72.5
Periaquaductal grey, dorsal
nTPM: 99.5
1840 Male, age 53, unknown 122.5
2850 Male, age 76, both hemispheres 106.6
2464 Female, age 72, unknown 85.4
1831 Male, age 72, unknown 83.5
Periaquaductal grey, lateral
nTPM: 80.7
2140 Male, age 76, both hemispheres 90.5
2053 Male, age 18, unknown 88.6
2272 Male, age 74, both hemispheres 63.1
Pretectal area
nTPM: 62.4
2825 Male, age 18, unknown 87.6
2224 Female, age 72, unknown 76.1
2407 Male, age 75, both hemispheres 69.2
2316 Male, age 76, right hemisphere 67.8
2273 Male, age 74, both hemispheres 61.3
1817 Female, age 42, unknown 61.2
2667 Female, age 75, unknown 60.7
1944 Female, age 72, unknown 56.9
2007 Male, age 72, unknown 51.0
1815 Male, age 53, unknown 50.6
1816 Male, age 51, unknown 44.4
Red nucleus
nTPM: 70.9
2584 Male, age 75, left hemisphere 104.8
2769 Male, age 72, unknown 82.8
1821 Female, age 72, unknown 80.5
2227 Male, age 72, unknown 79.6
1954 Female, age 42, unknown 79.1
2588 Male, age 74, left hemisphere 68.0
1865 Male, age 51, unknown 62.6
2823 Male, age 76, right hemisphere 61.8
2725 Female, age 75, unknown 61.2
2785 Male, age 18, unknown 57.0
1904 Male, age 53, unknown 56.7
2503 Female, age 72, unknown 56.2
Substantia nigra
nTPM: 86.2
2665 Male, age 74, both hemispheres 124.4
2583 Male, age 75, right hemisphere 119.5
2699 Male, age 18, unknown 95.6
2241 Male, age 72, unknown 83.6
1941 Male, age 53, unknown 82.9
2590 Female, age 75, unknown 80.1
1851 Male, age 51, unknown 79.0
1916 Female, age 42, unknown 73.2
1889 Female, age 72, unknown 67.2
2409 Female, age 72, unknown 56.7
Superior colliculus
nTPM: 63.1
2664 Male, age 75, both hemispheres 106.3
1839 Male, age 51, unknown 83.4
2668 Female, age 75, unknown 74.4
2587 Male, age 74, left hemisphere 66.3
1796 Male, age 53, unknown 62.7
1895 Male, age 76, right hemisphere 61.4
2261 Male, age 18, unknown 50.1
1995 Male, age 72, unknown 46.7
2087 Female, age 72, unknown 44.5
1913 Female, age 42, unknown 35.4
Ventral tegmental area
nTPM: 84.1
1942 Male, age 51, unknown 104.2
2021 Male, age 53, unknown 90.1
1915 Female, age 42, unknown 86.2
2223 Female, age 72, unknown 82.1
2218 Male, age 76, both hemispheres 74.9
2410 Female, age 72, unknown 67.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 95.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.2
Samples: 183

Max nTPM: 260.8
Min nTPM: 14.7
Std nTPM: 40.0
Median nTPM: 90.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 260.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 248.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 215.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 206.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 194.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 187.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 180.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 177.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 167.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 166.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 160.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.3
FF:10158-103A5 76 years, female 38.3

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 113.4
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 80.5
Samples: 1

Max nTPM: 80.5
Min nTPM: 80.5
Sample A 80.5
Midbrain
nTPM: 85.3
Samples: 1

Max nTPM: 85.3
Min nTPM: 85.3
Sample A 85.3
Superior colliculi
nTPM: 113.4
Samples: 1

Max nTPM: 113.4
Min nTPM: 113.4
Sample A 113.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 181.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 181.8
Samples: 3

Max nTPM: 227.6
Min nTPM: 130.9
Sample A Female 227.6
Sample B Female 130.9
Sample C Male 187.0
Midbrain
nTPM: 167.2
Samples: 3

Max nTPM: 214.4
Min nTPM: 106.2
Sample B Female 214.4
Sample C Male 106.2
Sample D Male 181.0
Periaqueductal gray
nTPM: 139.0
Samples: 3

Max nTPM: 149.3
Min nTPM: 121.5
Sample B Female 146.3
Sample C Male 149.3
Sample D Male 121.5
Superior colliculi
nTPM: 150.4
Samples: 4

Max nTPM: 266.6
Min nTPM: 60.0
Sample A Female 266.6
Sample B Female 60.0
Sample C Male 115.0
Sample D Male 160.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 246.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 246.4
Samples: 4

Max nTPM: 275.1
Min nTPM: 224.2
Sample A 258.4
Sample B 275.1
Sample C 224.2
Sample D 227.9

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 210.1
Rat sample Sample description nTPM
Midbrain
nTPM: 210.2
Samples: 4

Max nTPM: 232.4
Min nTPM: 193.3
Sample A 193.3
Sample A 232.4
Sample A 220.0
Sample A 194.9

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