MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.2 nTPM
HPA Brain:63.6 nTPM
GTEx:20.2 nTPM
FANTOM5:47.2 Scaled Tags Per Million
Pig:35.9 nTPM
Mouse:33.0 nTPM
Allen mouse:6.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 63.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.2
2411 Female, age 72, unknown 66.5
1830 Male, age 51, unknown 64.5
2586 Male, age 75, left hemisphere 62.3
1833 Male, age 53, unknown 61.5
1870 Female, age 42, unknown 58.9
2019 Male, age 18, unknown 57.2
2828 Female, age 72, unknown 52.7
2666 Male, age 74, left hemisphere 50.5
2219 Male, age 76, both hemispheres 49.0
1827 Male, age 72, unknown 48.6
Dorsal raphe nucleus
nTPM: 49.1
2750 Male, age 76, both hemispheres 67.1
2298 Female, age 72, unknown 47.7
2047 Male, age 72, unknown 45.0
2016 Female, age 72, unknown 43.2
1828 Male, age 53, unknown 42.4
Inferior colliculus
nTPM: 45.6
1890 Male, age 53, unknown 47.1
1848 Female, age 42, unknown 46.7
2849 Male, age 72, unknown 45.0
2097 Female, age 72, unknown 43.8
Median raphe nucleus
nTPM: 59.1
2220 Male, age 76, midline 59.1
Periaquaductal grey, anterior
nTPM: 49.9
2502 Female, age 75, unknown 58.4
1795 Male, age 51, unknown 46.0
1947 Male, age 18, unknown 45.2
Periaquaductal grey, dorsal
nTPM: 39.0
2464 Female, age 72, unknown 48.2
1831 Male, age 72, unknown 39.9
1840 Male, age 53, unknown 35.3
2850 Male, age 76, both hemispheres 32.6
Periaquaductal grey, lateral
nTPM: 42.1
2053 Male, age 18, unknown 46.8
2272 Male, age 74, both hemispheres 42.2
2140 Male, age 76, both hemispheres 37.4
Pretectal area
nTPM: 48.5
2407 Male, age 75, both hemispheres 60.7
1815 Male, age 53, unknown 54.8
2316 Male, age 76, right hemisphere 53.6
2825 Male, age 18, unknown 50.9
2007 Male, age 72, unknown 48.8
1817 Female, age 42, unknown 47.4
2224 Female, age 72, unknown 47.2
2667 Female, age 75, unknown 44.6
1816 Male, age 51, unknown 43.7
1944 Female, age 72, unknown 41.5
2273 Male, age 74, both hemispheres 40.3
Red nucleus
nTPM: 63.6
1904 Male, age 53, unknown 70.9
2588 Male, age 74, left hemisphere 70.0
2584 Male, age 75, left hemisphere 69.9
2823 Male, age 76, right hemisphere 69.1
2769 Male, age 72, unknown 67.3
1865 Male, age 51, unknown 65.3
2227 Male, age 72, unknown 65.1
2785 Male, age 18, unknown 62.9
1954 Female, age 42, unknown 57.2
1821 Female, age 72, unknown 56.8
2503 Female, age 72, unknown 55.9
2725 Female, age 75, unknown 53.1
Substantia nigra
nTPM: 46.1
2583 Male, age 75, right hemisphere 65.4
2590 Female, age 75, unknown 51.6
1851 Male, age 51, unknown 50.7
1889 Female, age 72, unknown 46.3
2241 Male, age 72, unknown 46.0
2699 Male, age 18, unknown 44.4
1916 Female, age 42, unknown 42.7
1941 Male, age 53, unknown 40.8
2665 Male, age 74, both hemispheres 38.1
2409 Female, age 72, unknown 35.3
Superior colliculus
nTPM: 50.8
1913 Female, age 42, unknown 61.2
1995 Male, age 72, unknown 55.7
1796 Male, age 53, unknown 51.6
1895 Male, age 76, right hemisphere 51.3
2587 Male, age 74, left hemisphere 51.3
2668 Female, age 75, unknown 48.8
2664 Male, age 75, both hemispheres 48.5
2261 Male, age 18, unknown 48.3
1839 Male, age 51, unknown 46.5
2087 Female, age 72, unknown 44.8
Ventral tegmental area
nTPM: 54.9
2223 Female, age 72, unknown 64.9
2218 Male, age 76, both hemispheres 55.3
2410 Female, age 72, unknown 55.1
1942 Male, age 51, unknown 54.2
2021 Male, age 53, unknown 52.1
1915 Female, age 42, unknown 47.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.2
Samples: 183

Max nTPM: 57.2
Min nTPM: 8.8
Std nTPM: 7.3
Median nTPM: 18.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 57.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 45.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 43.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 43.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 42.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 42.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 40.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 40.0
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 38.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 35.1
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 34.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.2
FF:10158-103A5 76 years, female 47.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.8
Samples: 4

Max nTPM: 37.5
Min nTPM: 20.1
Sample A Female 37.3
Sample B Female 20.1
Sample C Male 37.5
Sample D Male 24.2
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 55.1
Min nTPM: 26.6
Sample A Female 55.1
Sample B Female 26.6
Sample C Male 32.4
Sample D Male 29.6
Periaqueductal gray
nTPM: 21.6
Samples: 3

Max nTPM: 24.4
Min nTPM: 18.4
Sample B Female 22.0
Sample C Male 24.4
Sample D Male 18.4
Superior colliculi
nTPM: 24.6
Samples: 4

Max nTPM: 28.9
Min nTPM: 18.0
Sample A Female 28.6
Sample B Female 18.0
Sample C Male 23.0
Sample D Male 28.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 33.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.0
Samples: 4

Max nTPM: 34.4
Min nTPM: 31.7
Sample A Male 32.4
Sample B Male 31.7
Sample C Female 33.3
Sample D Female 34.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.6
68798980 Antisense, RP_050217_01_G06, Mouse strain C57BL/6J (56 days, male) 6.6

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