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  • YWHAE
BRAIN MIDBRAIN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Midbrain
Brain methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:531.5 nTPM
HPA Brain:282.4 nTPM
GTEx:531.5 nTPM
FANTOM5:674.0 Scaled Tags Per Million
Pig:1236.5 nTPM
Mouse:566.6 nTPM
Allen mouse:7.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

282.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 248.5
2666 Male, age 74, left hemisphere 272.8
1870 Female, age 42, unknown 272.4
1827 Male, age 72, unknown 269.7
2411 Female, age 72, unknown 260.2
1833 Male, age 53, unknown 258.6
2828 Female, age 72, unknown 256.9
2019 Male, age 18, unknown 250.0
1830 Male, age 51, unknown 248.5
2219 Male, age 76, both hemispheres 215.6
2586 Male, age 75, left hemisphere 180.3
Dorsal raphe nucleus
nTPM: 278.5
2298 Female, age 72, unknown 341.2
2750 Male, age 76, both hemispheres 271.3
1828 Male, age 53, unknown 269.1
2016 Female, age 72, unknown 264.7
2047 Male, age 72, unknown 246.4
Inferior colliculus
nTPM: 259.2
2097 Female, age 72, unknown 283.3
2849 Male, age 72, unknown 260.6
1848 Female, age 42, unknown 250.2
1890 Male, age 53, unknown 242.6
Median raphe nucleus
nTPM: 263.5
2220 Male, age 76, midline 263.5
Periaquaductal grey, anterior
nTPM: 248.7
1795 Male, age 51, unknown 259.4
1947 Male, age 18, unknown 243.9
2502 Female, age 75, unknown 242.9
Periaquaductal grey, dorsal
nTPM: 263.1
2850 Male, age 76, both hemispheres 313.4
1840 Male, age 53, unknown 260.0
1831 Male, age 72, unknown 252.3
2464 Female, age 72, unknown 226.6
Periaquaductal grey, lateral
nTPM: 242.8
2140 Male, age 76, both hemispheres 244.6
2053 Male, age 18, unknown 242.8
2272 Male, age 74, both hemispheres 241.0
Pretectal area
nTPM: 282.4
1817 Female, age 42, unknown 323.8
1815 Male, age 53, unknown 313.5
2224 Female, age 72, unknown 311.1
1816 Male, age 51, unknown 305.3
1944 Female, age 72, unknown 300.1
2273 Male, age 74, both hemispheres 294.6
2007 Male, age 72, unknown 289.2
2825 Male, age 18, unknown 268.3
2667 Female, age 75, unknown 236.5
2316 Male, age 76, right hemisphere 232.6
2407 Male, age 75, both hemispheres 231.2
Red nucleus
nTPM: 270.5
2725 Female, age 75, unknown 328.4
1821 Female, age 72, unknown 321.9
2503 Female, age 72, unknown 311.1
2823 Male, age 76, right hemisphere 275.1
1904 Male, age 53, unknown 262.3
2588 Male, age 74, left hemisphere 259.5
2785 Male, age 18, unknown 258.3
1954 Female, age 42, unknown 256.0
2227 Male, age 72, unknown 255.1
1865 Male, age 51, unknown 253.2
2769 Male, age 72, unknown 245.7
2584 Male, age 75, left hemisphere 219.1
Substantia nigra
nTPM: 275.5
2241 Male, age 72, unknown 319.3
1916 Female, age 42, unknown 301.0
1889 Female, age 72, unknown 295.6
2699 Male, age 18, unknown 290.5
1851 Male, age 51, unknown 279.6
1941 Male, age 53, unknown 279.4
2665 Male, age 74, both hemispheres 267.3
2590 Female, age 75, unknown 262.3
2409 Female, age 72, unknown 239.2
2583 Male, age 75, right hemisphere 220.8
Superior colliculus
nTPM: 263.2
2587 Male, age 74, left hemisphere 303.1
2668 Female, age 75, unknown 272.3
2261 Male, age 18, unknown 271.0
1913 Female, age 42, unknown 266.9
1995 Male, age 72, unknown 265.9
2087 Female, age 72, unknown 265.8
1796 Male, age 53, unknown 262.2
1839 Male, age 51, unknown 249.3
1895 Male, age 76, right hemisphere 239.3
2664 Male, age 75, both hemispheres 236.0
Ventral tegmental area
nTPM: 270.2
2223 Female, age 72, unknown 298.9
2218 Male, age 76, both hemispheres 287.4
1915 Female, age 42, unknown 275.7
1942 Male, age 51, unknown 258.1
2021 Male, age 53, unknown 255.2
2410 Female, age 72, unknown 246.0

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

531.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 531.5
Samples: 183

Max nTPM: 893.7
Min nTPM: 262.2
Std nTPM: 113.7
Median nTPM: 513.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 893.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 893.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 889.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 851.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 845.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 800.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 785.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 778.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 741.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 725.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 725.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 724.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 723.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 706.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 704.7
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 702.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 685.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 685.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 685.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 679.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 675.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 658.7
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 656.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 655.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 653.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 645.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 644.2
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 639.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 633.7
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 632.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 631.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 628.9
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 628.5
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 625.2
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 625.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 622.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 620.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 616.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 613.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 609.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 609.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 608.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 608.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 606.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 606.0
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 604.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 604.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 603.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 600.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 600.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 597.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 591.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 585.7
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 575.5
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 571.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 571.3
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 570.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 570.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 568.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 567.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 564.8
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 564.3
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 551.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 550.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 548.7
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 547.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 544.9
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 536.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 536.2
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 535.6
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 533.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 532.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 532.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 531.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 531.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 530.2
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 530.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 529.3
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 527.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 527.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 523.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 522.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 522.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 521.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 521.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 520.8
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 519.7
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 516.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 515.1
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 514.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 514.5
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 513.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 512.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 512.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 512.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 510.9
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 509.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 508.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 508.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 508.1
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 506.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 506.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 505.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 503.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 503.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 501.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 499.9
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 499.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 497.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 497.0
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 496.0
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 493.7
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 492.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 490.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 490.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 489.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 489.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 488.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 488.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 482.2
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 480.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 478.6
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 476.8
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 475.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 471.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 468.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 465.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 457.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 456.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 455.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 450.9
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 449.5
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 448.2
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 446.2
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 443.3
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 441.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 439.4
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 439.1
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 436.9
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 435.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 434.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 434.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 433.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 433.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 431.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 431.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 431.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 431.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 430.6
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 430.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 429.4
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 427.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 427.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 426.2
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 425.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 424.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 420.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 420.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 418.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 414.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 413.8
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 412.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 410.2
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 408.6
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 406.3
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 406.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 402.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 398.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 397.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 396.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 394.7
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 392.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 387.0
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 386.3
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 384.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 380.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 378.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 368.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 364.5
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 358.7
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 352.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 344.6
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 262.2
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

674.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 674.0
FF:10158-103A5 76 years, female 674.0

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1236.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1035.1
Samples: 4

Max nTPM: 1179.6
Min nTPM: 854.2
Sample A Female 1179.6
Sample B Female 854.2
Sample C Male 1075.9
Sample D Male 1030.8
Midbrain
nTPM: 1236.5
Samples: 4

Max nTPM: 1633.1
Min nTPM: 1057.4
Sample A Female 1633.1
Sample B Female 1099.2
Sample C Male 1156.4
Sample D Male 1057.4
Periaqueductal gray
nTPM: 1010.1
Samples: 3

Max nTPM: 1101.6
Min nTPM: 945.9
Sample B Female 982.7
Sample C Male 1101.6
Sample D Male 945.9
Superior colliculi
nTPM: 1092.0
Samples: 4

Max nTPM: 1267.4
Min nTPM: 808.7
Sample A Female 1267.4
Sample B Female 808.7
Sample C Male 1213.4
Sample D Male 1078.3

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

566.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 566.6
Samples: 4

Max nTPM: 573.6
Min nTPM: 555.0
Sample A Male 573.6
Sample B Male 571.9
Sample C Female 565.8
Sample D Female 555.0

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.4
2739 Antisense, RP_Baylor_103126, Mouse strain C57BL/6J (56 days, male) 7.4
2740 Antisense, RP_Baylor_103126, Mouse strain C57BL/6J (56 days, male) 4.5

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