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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
282.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 248.5
2666
Male, age 74, left hemisphere
272.8
1870
Female, age 42, unknown
272.4
1827
Male, age 72, unknown
269.7
2411
Female, age 72, unknown
260.2
1833
Male, age 53, unknown
258.6
2828
Female, age 72, unknown
256.9
2019
Male, age 18, unknown
250.0
1830
Male, age 51, unknown
248.5
2219
Male, age 76, both hemispheres
215.6
2586
Male, age 75, left hemisphere
180.3
Dorsal raphe nucleus nTPM: 278.5
2298
Female, age 72, unknown
341.2
2750
Male, age 76, both hemispheres
271.3
1828
Male, age 53, unknown
269.1
2016
Female, age 72, unknown
264.7
2047
Male, age 72, unknown
246.4
Inferior colliculus nTPM: 259.2
2097
Female, age 72, unknown
283.3
2849
Male, age 72, unknown
260.6
1848
Female, age 42, unknown
250.2
1890
Male, age 53, unknown
242.6
Median raphe nucleus nTPM: 263.5
2220
Male, age 76, midline
263.5
Periaquaductal grey, anterior nTPM: 248.7
1795
Male, age 51, unknown
259.4
1947
Male, age 18, unknown
243.9
2502
Female, age 75, unknown
242.9
Periaquaductal grey, dorsal nTPM: 263.1
2850
Male, age 76, both hemispheres
313.4
1840
Male, age 53, unknown
260.0
1831
Male, age 72, unknown
252.3
2464
Female, age 72, unknown
226.6
Periaquaductal grey, lateral nTPM: 242.8
2140
Male, age 76, both hemispheres
244.6
2053
Male, age 18, unknown
242.8
2272
Male, age 74, both hemispheres
241.0
Pretectal area nTPM: 282.4
1817
Female, age 42, unknown
323.8
1815
Male, age 53, unknown
313.5
2224
Female, age 72, unknown
311.1
1816
Male, age 51, unknown
305.3
1944
Female, age 72, unknown
300.1
2273
Male, age 74, both hemispheres
294.6
2007
Male, age 72, unknown
289.2
2825
Male, age 18, unknown
268.3
2667
Female, age 75, unknown
236.5
2316
Male, age 76, right hemisphere
232.6
2407
Male, age 75, both hemispheres
231.2
Red nucleus nTPM: 270.5
2725
Female, age 75, unknown
328.4
1821
Female, age 72, unknown
321.9
2503
Female, age 72, unknown
311.1
2823
Male, age 76, right hemisphere
275.1
1904
Male, age 53, unknown
262.3
2588
Male, age 74, left hemisphere
259.5
2785
Male, age 18, unknown
258.3
1954
Female, age 42, unknown
256.0
2227
Male, age 72, unknown
255.1
1865
Male, age 51, unknown
253.2
2769
Male, age 72, unknown
245.7
2584
Male, age 75, left hemisphere
219.1
Substantia nigra nTPM: 275.5
2241
Male, age 72, unknown
319.3
1916
Female, age 42, unknown
301.0
1889
Female, age 72, unknown
295.6
2699
Male, age 18, unknown
290.5
1851
Male, age 51, unknown
279.6
1941
Male, age 53, unknown
279.4
2665
Male, age 74, both hemispheres
267.3
2590
Female, age 75, unknown
262.3
2409
Female, age 72, unknown
239.2
2583
Male, age 75, right hemisphere
220.8
Superior colliculus nTPM: 263.2
2587
Male, age 74, left hemisphere
303.1
2668
Female, age 75, unknown
272.3
2261
Male, age 18, unknown
271.0
1913
Female, age 42, unknown
266.9
1995
Male, age 72, unknown
265.9
2087
Female, age 72, unknown
265.8
1796
Male, age 53, unknown
262.2
1839
Male, age 51, unknown
249.3
1895
Male, age 76, right hemisphere
239.3
2664
Male, age 75, both hemispheres
236.0
Ventral tegmental area nTPM: 270.2
2223
Female, age 72, unknown
298.9
2218
Male, age 76, both hemispheres
287.4
1915
Female, age 42, unknown
275.7
1942
Male, age 51, unknown
258.1
2021
Male, age 53, unknown
255.2
2410
Female, age 72, unknown
246.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
531.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 531.5
Samples: 183
Max nTPM: 893.7
Min nTPM: 262.2
Std nTPM: 113.7
Median nTPM: 513.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
893.7
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
893.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
889.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
851.4
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
845.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
800.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
785.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
778.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
741.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
725.7
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
725.6
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
724.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
723.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
706.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
704.7
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
702.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
685.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
685.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
685.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
679.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
675.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
658.7
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
656.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
655.8
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
653.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
645.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
644.2
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
639.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
633.7
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
632.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
631.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
628.9
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
628.5
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
625.2
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
625.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
622.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
620.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
616.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
613.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
609.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
609.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
608.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
608.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
606.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
606.0
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
604.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
604.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
603.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
600.5
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
600.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
597.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
591.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
585.7
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
575.5
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
571.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
571.3
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
570.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
570.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
568.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
567.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
564.8
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
564.3
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
551.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
550.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
548.7
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
547.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
544.9
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
536.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
536.2
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
535.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
533.5
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
532.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
532.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
531.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
531.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
530.2
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
530.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
529.3
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
527.4
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
527.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
523.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
522.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
522.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
521.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
521.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
520.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
519.7
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
516.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
515.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
514.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
514.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
513.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
512.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
512.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
512.2
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
510.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
509.3
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
508.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
508.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
508.1
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
506.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
506.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
505.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
503.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
503.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
501.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
499.9
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
499.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
497.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
497.0
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
496.0
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
493.7
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
492.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
490.4
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
490.3
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
489.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
489.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
488.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
488.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
482.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
480.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
478.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
476.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
475.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
471.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
468.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
465.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
457.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
456.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
455.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
450.9
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
449.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
448.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
446.2
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
443.3
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
441.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
439.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
439.1
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
436.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
435.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
434.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
434.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
433.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
433.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
431.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
431.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
431.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
431.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
430.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
430.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
429.4
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
427.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
427.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
426.2
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
425.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
424.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
420.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
420.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
418.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
414.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
413.8
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
412.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
410.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
408.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
406.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
406.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
402.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
398.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
397.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
396.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
394.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
392.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
387.0
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
386.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
384.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
380.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
378.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
368.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
364.5
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
358.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
352.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
344.6
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
262.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1236.5
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 1035.1
Samples: 4
Max nTPM: 1179.6
Min nTPM: 854.2
Sample A
Female
1179.6
Sample B
Female
854.2
Sample C
Male
1075.9
Sample D
Male
1030.8
Midbrain nTPM: 1236.5
Samples: 4
Max nTPM: 1633.1
Min nTPM: 1057.4
Sample A
Female
1633.1
Sample B
Female
1099.2
Sample C
Male
1156.4
Sample D
Male
1057.4
Periaqueductal gray nTPM: 1010.1
Samples: 3
Max nTPM: 1101.6
Min nTPM: 945.9
Sample B
Female
982.7
Sample C
Male
1101.6
Sample D
Male
945.9
Superior colliculi nTPM: 1092.0
Samples: 4
Max nTPM: 1267.4
Min nTPM: 808.7
Sample A
Female
1267.4
Sample B
Female
808.7
Sample C
Male
1213.4
Sample D
Male
1078.3
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
566.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 566.6
Samples: 4
Max nTPM: 573.6
Min nTPM: 555.0
Sample A
Male
573.6
Sample B
Male
571.9
Sample C
Female
565.8
Sample D
Female
555.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.