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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:160.5 nTPM
HPA Brain:139.5 nTPM
GTEx:160.5 nTPM
FANTOM5:199.5 Scaled Tags Per Million
Pig:171.4 nTPM
Mouse:400.3 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.5
Sample id Sample description nTPM
Amygdala
nTPM: 139.5
2814 Male, age 76, right hemisphere 165.8
2514 Male, age 75, right hemisphere 147.8
1987 Female, age 91, left hemisphere 142.7
2517 Female, age 94, left hemisphere 122.9
2695 Female, age 67, right hemisphere 118.0
Basal amygdala
nTPM: 127.4
2685 Female, age 94, left hemisphere 148.6
2243 Female, age 91, right hemisphere 142.8
2110 Male, age 80, left hemisphere 132.8
2609 Male, age 75, right hemisphere 132.1
1955 Male, age 76, both hemispheres 130.1
2827 Female, age 67, right hemisphere 78.0
Central amygdala
nTPM: 133.5
1905 Male, age 76, both hemispheres 142.5
2239 Male, age 80, left hemisphere 139.8
2826 Female, age 94, left hemisphere 137.0
2701 Female, age 91, right hemisphere 130.0
2515 Male, age 75, right hemisphere 118.0
Corticomedial amygdala
nTPM: 137.2
2829 Male, age 80, left hemisphere 153.7
2242 Female, age 91, right hemisphere 153.1
2429 Female, age 94, left hemisphere 151.9
2240 Male, age 76, both hemispheres 150.5
2428 Male, age 75, right hemisphere 125.3
2535 Female, age 67, right hemisphere 88.8
Lateral amygdala
nTPM: 115.6
1883 Male, age 76, both hemispheres 144.7
2516 Male, age 75, right hemisphere 129.3
2534 Female, age 94, left hemisphere 122.0
2255 Female, age 91, right hemisphere 112.3
2256 Male, age 80, left hemisphere 96.5
2830 Female, age 67, right hemisphere 88.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 160.5
Samples: 181

Max nTPM: 284.7
Min nTPM: 88.9
Std nTPM: 37.9
Median nTPM: 154.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 284.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 274.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 261.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 256.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 242.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 241.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 239.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 238.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 237.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 235.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 234.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 229.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 229.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 227.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 219.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 218.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 216.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 212.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 211.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 208.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 208.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 207.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 205.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 204.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 203.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 202.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 200.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 199.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 198.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 198.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 196.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 195.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 195.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 192.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 189.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 189.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 188.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 187.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 184.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 184.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 183.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 182.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 182.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 180.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 179.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 179.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 179.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 179.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 178.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 178.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 178.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 177.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 176.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 175.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 175.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 175.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 175.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 174.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 174.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 173.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 173.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 173.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 172.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 169.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 168.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 168.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 168.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 168.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 168.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 166.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 166.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 165.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 165.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 164.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 163.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 163.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 163.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 163.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 163.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 162.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 162.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 161.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 161.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 160.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 160.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 160.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 158.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 156.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 156.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 155.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 154.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 153.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 152.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 152.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 152.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 151.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 151.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 151.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 151.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 151.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 151.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 150.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 150.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 149.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 148.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 147.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 146.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 146.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 146.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 145.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 145.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 144.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 143.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 143.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 143.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 143.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 143.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 141.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 141.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 141.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 141.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 140.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 140.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 139.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 139.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 138.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 138.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 137.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 137.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 136.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 136.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 135.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 134.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 134.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 133.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 133.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 133.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 132.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 131.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 131.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 130.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 130.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 130.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 128.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 128.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 126.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 126.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 125.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 125.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 125.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 125.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 124.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 124.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 124.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 121.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 119.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 118.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 117.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 115.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 115.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 114.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 113.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 113.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 113.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 113.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 112.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 112.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 111.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 111.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 110.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 110.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 106.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 106.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 106.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 105.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 104.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 102.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 100.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 99.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 96.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 88.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

199.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 199.5
FF:10151-102I7 76 years, female 199.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.4
Pig sample Sample description nTPM
Amygdala
nTPM: 171.4
Samples: 4

Max nTPM: 240.6
Min nTPM: 132.0
Sample A Female 240.6
Sample B Female 150.0
Sample C Male 132.0
Sample D Male 163.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

400.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 400.3
Samples: 4

Max nTPM: 427.3
Min nTPM: 374.3
Sample A Male 427.3
Sample B Male 399.1
Sample C Female 374.3
Sample D Female 400.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
73512529 Antisense, RP_050913_01_A05, Mouse strain C57BL/6J (56 days, male) 0.0

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