MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:142.0 nTPM
HPA Brain:142.3 nTPM
GTEx:142.0 nTPM
FANTOM5:177.3 Scaled Tags Per Million
Pig:254.5 nTPM
Mouse:467.7 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 142.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 129.0
1870 Female, age 42, unknown 152.7
2411 Female, age 72, unknown 146.3
2019 Male, age 18, unknown 139.5
1833 Male, age 53, unknown 136.4
1830 Male, age 51, unknown 132.3
2586 Male, age 75, left hemisphere 131.1
1827 Male, age 72, unknown 128.8
2219 Male, age 76, both hemispheres 120.1
2666 Male, age 74, left hemisphere 105.3
2828 Female, age 72, unknown 97.8
Dorsal raphe nucleus
nTPM: 136.4
2298 Female, age 72, unknown 151.6
2047 Male, age 72, unknown 139.8
1828 Male, age 53, unknown 137.1
2750 Male, age 76, both hemispheres 130.8
2016 Female, age 72, unknown 122.5
Inferior colliculus
nTPM: 141.0
1848 Female, age 42, unknown 151.9
2849 Male, age 72, unknown 143.6
2097 Female, age 72, unknown 138.8
1890 Male, age 53, unknown 129.8
Median raphe nucleus
nTPM: 142.3
2220 Male, age 76, midline 142.3
Periaquaductal grey, anterior
nTPM: 133.9
1947 Male, age 18, unknown 146.6
2502 Female, age 75, unknown 128.8
1795 Male, age 51, unknown 126.4
Periaquaductal grey, dorsal
nTPM: 125.5
2850 Male, age 76, both hemispheres 142.4
1840 Male, age 53, unknown 138.5
2464 Female, age 72, unknown 110.6
1831 Male, age 72, unknown 110.4
Periaquaductal grey, lateral
nTPM: 126.0
2272 Male, age 74, both hemispheres 134.7
2053 Male, age 18, unknown 129.0
2140 Male, age 76, both hemispheres 114.3
Pretectal area
nTPM: 140.7
1944 Female, age 72, unknown 167.2
1817 Female, age 42, unknown 158.7
2007 Male, age 72, unknown 149.3
2224 Female, age 72, unknown 146.1
1816 Male, age 51, unknown 141.6
2273 Male, age 74, both hemispheres 141.0
1815 Male, age 53, unknown 140.0
2667 Female, age 75, unknown 139.0
2825 Male, age 18, unknown 129.9
2407 Male, age 75, both hemispheres 118.5
2316 Male, age 76, right hemisphere 116.6
Red nucleus
nTPM: 127.6
1821 Female, age 72, unknown 153.7
2725 Female, age 75, unknown 137.3
1865 Male, age 51, unknown 136.8
1954 Female, age 42, unknown 130.5
2588 Male, age 74, left hemisphere 128.4
1904 Male, age 53, unknown 126.4
2785 Male, age 18, unknown 124.9
2584 Male, age 75, left hemisphere 124.6
2823 Male, age 76, right hemisphere 118.3
2503 Female, age 72, unknown 117.0
2227 Male, age 72, unknown 116.9
2769 Male, age 72, unknown 115.9
Substantia nigra
nTPM: 138.2
2241 Male, age 72, unknown 179.3
1889 Female, age 72, unknown 154.9
2409 Female, age 72, unknown 153.0
1941 Male, age 53, unknown 145.3
1916 Female, age 42, unknown 139.6
1851 Male, age 51, unknown 137.1
2590 Female, age 75, unknown 131.9
2699 Male, age 18, unknown 119.9
2583 Male, age 75, right hemisphere 115.5
2665 Male, age 74, both hemispheres 105.5
Superior colliculus
nTPM: 132.7
1895 Male, age 76, right hemisphere 160.7
2587 Male, age 74, left hemisphere 143.7
1839 Male, age 51, unknown 136.6
2087 Female, age 72, unknown 134.8
2261 Male, age 18, unknown 134.5
2668 Female, age 75, unknown 132.4
1796 Male, age 53, unknown 128.2
1913 Female, age 42, unknown 127.5
1995 Male, age 72, unknown 120.3
2664 Male, age 75, both hemispheres 107.9
Ventral tegmental area
nTPM: 132.9
2410 Female, age 72, unknown 143.3
2223 Female, age 72, unknown 140.5
1915 Female, age 42, unknown 138.4
2218 Male, age 76, both hemispheres 138.0
1942 Male, age 51, unknown 120.0
2021 Male, age 53, unknown 117.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 142.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 142.0
Samples: 183

Max nTPM: 268.2
Min nTPM: 79.5
Std nTPM: 30.6
Median nTPM: 137.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 268.2
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 262.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 230.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 218.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 218.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 214.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 207.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 202.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 198.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 198.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 196.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 177.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 177.3
FF:10158-103A5 76 years, female 177.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 254.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 194.2
Samples: 4

Max nTPM: 262.2
Min nTPM: 116.1
Sample A Female 262.2
Sample B Female 164.4
Sample C Male 234.0
Sample D Male 116.1
Midbrain
nTPM: 241.8
Samples: 4

Max nTPM: 320.7
Min nTPM: 164.6
Sample A Female 164.6
Sample B Female 191.2
Sample C Male 320.7
Sample D Male 290.8
Periaqueductal gray
nTPM: 206.7
Samples: 3

Max nTPM: 249.3
Min nTPM: 174.2
Sample B Female 174.2
Sample C Male 249.3
Sample D Male 196.7
Superior colliculi
nTPM: 254.5
Samples: 4

Max nTPM: 329.1
Min nTPM: 158.9
Sample A Female 281.3
Sample B Female 158.9
Sample C Male 329.1
Sample D Male 248.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 467.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 467.7
Samples: 4

Max nTPM: 479.9
Min nTPM: 459.1
Sample A Male 459.1
Sample B Male 469.0
Sample C Female 479.9
Sample D Female 462.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
73512529 Antisense, RP_050913_01_A05, Mouse strain C57BL/6J (56 days, male) 0.6

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