BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:97.2 nTPM
HPA Brain:171.6 nTPM
GTEx:97.2 nTPM
FANTOM5:287.0 Scaled Tags Per Million
Macaque:244.6 nTPM
Mouse:198.8 nTPM
Rat:104.9 nTPM
Pig:123.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 171.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 145.1
2019 Male, age 18, unknown 167.4
1870 Female, age 42, unknown 155.6
1833 Male, age 53, unknown 153.8
1827 Male, age 72, unknown 150.2
1830 Male, age 51, unknown 149.5
2411 Female, age 72, unknown 144.1
2666 Male, age 74, left hemisphere 144.0
2828 Female, age 72, unknown 136.8
2219 Male, age 76, both hemispheres 125.9
2586 Male, age 75, left hemisphere 123.5
Dorsal raphe nucleus
nTPM: 153.2
2298 Female, age 72, unknown 157.8
1828 Male, age 53, unknown 154.9
2750 Male, age 76, both hemispheres 154.7
2047 Male, age 72, unknown 150.9
2016 Female, age 72, unknown 147.5
Inferior colliculus
nTPM: 154.3
2097 Female, age 72, unknown 162.5
2849 Male, age 72, unknown 153.0
1890 Male, age 53, unknown 151.2
1848 Female, age 42, unknown 150.3
Median raphe nucleus
nTPM: 171.6
2220 Male, age 76, midline 171.6
Periaquaductal grey, anterior
nTPM: 143.9
2502 Female, age 75, unknown 149.7
1947 Male, age 18, unknown 145.9
1795 Male, age 51, unknown 136.2
Periaquaductal grey, dorsal
nTPM: 154.8
2850 Male, age 76, both hemispheres 186.3
1831 Male, age 72, unknown 153.0
1840 Male, age 53, unknown 140.6
2464 Female, age 72, unknown 139.4
Periaquaductal grey, lateral
nTPM: 159.6
2272 Male, age 74, both hemispheres 171.6
2140 Male, age 76, both hemispheres 164.4
2053 Male, age 18, unknown 142.8
Pretectal area
nTPM: 165.2
1817 Female, age 42, unknown 193.7
2007 Male, age 72, unknown 181.8
1944 Female, age 72, unknown 180.9
1816 Male, age 51, unknown 178.8
2273 Male, age 74, both hemispheres 170.6
1815 Male, age 53, unknown 169.4
2667 Female, age 75, unknown 161.7
2224 Female, age 72, unknown 159.7
2407 Male, age 75, both hemispheres 143.8
2825 Male, age 18, unknown 139.1
2316 Male, age 76, right hemisphere 137.5
Red nucleus
nTPM: 152.3
1821 Female, age 72, unknown 174.4
2785 Male, age 18, unknown 167.4
1904 Male, age 53, unknown 157.9
1865 Male, age 51, unknown 155.1
1954 Female, age 42, unknown 155.0
2725 Female, age 75, unknown 154.0
2823 Male, age 76, right hemisphere 153.4
2503 Female, age 72, unknown 153.0
2584 Male, age 75, left hemisphere 151.5
2227 Male, age 72, unknown 141.8
2769 Male, age 72, unknown 138.6
2588 Male, age 74, left hemisphere 125.6
Substantia nigra
nTPM: 167.6
1889 Female, age 72, unknown 184.2
2241 Male, age 72, unknown 181.9
1916 Female, age 42, unknown 181.7
1941 Male, age 53, unknown 179.9
1851 Male, age 51, unknown 175.1
2409 Female, age 72, unknown 166.7
2699 Male, age 18, unknown 163.9
2665 Male, age 74, both hemispheres 150.6
2590 Female, age 75, unknown 149.6
2583 Male, age 75, right hemisphere 142.6
Superior colliculus
nTPM: 150.1
2087 Female, age 72, unknown 170.3
2668 Female, age 75, unknown 160.7
2587 Male, age 74, left hemisphere 158.3
1913 Female, age 42, unknown 157.9
2261 Male, age 18, unknown 154.7
1796 Male, age 53, unknown 146.7
1995 Male, age 72, unknown 143.9
1839 Male, age 51, unknown 141.2
1895 Male, age 76, right hemisphere 138.4
2664 Male, age 75, both hemispheres 129.1
Ventral tegmental area
nTPM: 152.7
2218 Male, age 76, both hemispheres 174.2
2223 Female, age 72, unknown 159.6
2410 Female, age 72, unknown 152.4
1915 Female, age 42, unknown 149.9
1942 Male, age 51, unknown 141.2
2021 Male, age 53, unknown 139.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 97.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.2
Samples: 183

Max nTPM: 188.7
Min nTPM: 66.2
Std nTPM: 19.5
Median nTPM: 92.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 188.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 173.8
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 161.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 144.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 144.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 139.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 139.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 138.5
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 136.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 133.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 132.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 287.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 287.0
FF:10158-103A5 76 years, female 287.0

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 244.6
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 177.8
Samples: 1

Max nTPM: 177.8
Min nTPM: 177.8
Sample A 177.8
Midbrain
nTPM: 244.6
Samples: 1

Max nTPM: 244.6
Min nTPM: 244.6
Sample A 244.6
Superior colliculi
nTPM: 237.1
Samples: 1

Max nTPM: 237.1
Min nTPM: 237.1
Sample A 237.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 123.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 120.1
Samples: 3

Max nTPM: 133.6
Min nTPM: 108.5
Sample A Female 133.6
Sample B Female 108.5
Sample C Male 118.3
Midbrain
nTPM: 121.1
Samples: 3

Max nTPM: 128.0
Min nTPM: 114.9
Sample B Female 120.3
Sample C Male 128.0
Sample D Male 114.9
Periaqueductal gray
nTPM: 108.6
Samples: 3

Max nTPM: 115.5
Min nTPM: 103.7
Sample B Female 103.7
Sample C Male 115.5
Sample D Male 106.6
Superior colliculi
nTPM: 123.3
Samples: 4

Max nTPM: 135.4
Min nTPM: 111.2
Sample A Female 132.5
Sample B Female 111.2
Sample C Male 135.4
Sample D Male 114.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 198.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 198.8
Samples: 4

Max nTPM: 201.0
Min nTPM: 195.5
Sample A 198.8
Sample B 199.9
Sample C 201.0
Sample D 195.5

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 104.9
Rat sample Sample description nTPM
Midbrain
nTPM: 104.9
Samples: 4

Max nTPM: 105.7
Min nTPM: 103.6
Sample A 103.6
Sample A 105.2
Sample A 105.7
Sample A 105.0

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