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RPL34
HPA
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • STRUCTURE

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  • RPL34
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:945.6 nTPM
FANTOM5:27.0 Scaled Tags Per Million
Pig:312.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA035139
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

945.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 945.6
Samples: 300

Max nTPM: 2951.7
Min nTPM: 431.5
Std nTPM: 328.0
Median nTPM: 883.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2951.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 2736.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 2190.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2148.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2111.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1970.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1882.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1794.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1786.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1771.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1731.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1683.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1682.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1632.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1565.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1504.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1422.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1415.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1409.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1388.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1383.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1364.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1348.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1345.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1342.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1336.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1307.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1299.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1285.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1284.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1283.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1280.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1280.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1279.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1271.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1267.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1266.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1265.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1260.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1258.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1239.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1233.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1224.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1224.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1196.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1192.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1191.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1186.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1185.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1184.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1182.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1179.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1174.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1169.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1168.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1160.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1160.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1147.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1145.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1124.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1122.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1116.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1116.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1111.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1101.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1097.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1092.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1089.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 1088.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1082.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1073.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1068.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1068.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1063.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1058.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1050.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1047.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1045.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1042.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1039.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1038.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1038.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1036.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1033.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1027.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1026.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1018.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1016.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1015.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1011.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1010.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1008.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1002.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1002.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 994.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 994.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 989.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 988.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 985.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 977.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 975.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 973.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 972.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 970.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 968.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 957.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 957.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 954.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 953.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 953.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 951.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 948.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 945.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 945.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 941.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 940.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 934.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 933.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 924.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 920.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 915.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 915.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 914.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 910.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 910.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 909.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 909.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 908.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 908.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 906.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 906.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 905.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 904.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 904.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 902.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 901.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 900.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 900.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 899.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 898.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 896.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 894.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 893.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 891.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 890.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 890.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 889.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 884.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 884.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 884.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 883.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 877.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 876.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 876.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 876.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 875.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 873.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 870.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 870.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 868.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 863.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 859.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 859.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 859.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 856.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 855.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 855.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 855.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 855.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 853.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 852.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 850.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 847.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 846.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 844.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 842.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 842.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 841.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 839.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 838.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 836.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 836.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 834.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 834.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 833.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 830.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 823.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 823.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 821.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 817.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 813.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 805.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 805.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 804.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 802.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 799.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 797.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 793.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 791.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 789.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 785.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 784.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 781.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 781.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 780.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 780.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 776.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 775.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 774.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 773.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 770.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 765.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 763.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 761.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 757.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 757.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 756.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 753.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 753.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 752.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 751.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 750.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 748.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 748.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 747.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 745.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 744.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 743.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 741.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 737.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 736.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 730.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 728.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 724.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 720.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 718.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 716.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 710.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 709.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 708.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 707.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 704.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 704.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 703.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 694.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 694.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 694.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 692.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 691.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 690.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 686.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 683.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 681.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 677.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 676.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 676.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 673.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 671.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 671.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 669.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 667.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 665.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 664.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 659.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 653.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 647.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 645.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 644.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 642.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 640.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 632.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 627.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 621.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 620.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 618.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 618.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 615.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 612.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 611.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 608.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 595.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 594.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 589.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 583.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 576.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 563.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 563.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 560.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 560.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 548.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 538.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 537.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 534.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 526.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 519.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 516.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 507.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 500.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 449.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 431.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

27.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.0
FF:10164-103B2 76 years, female 27.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

312.9
Pig sample Sample description nTPM
Caudate
nTPM: 312.9
Samples: 4

Max nTPM: 356.1
Min nTPM: 276.1
Sample A Female 356.1
Sample B Female 306.8
Sample C Male 312.5
Sample D Male 276.1

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