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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:406.5 nTPM
GTEx:406.5 nTPM
FANTOM5:23.1 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

406.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 406.5
Samples: 105

Max nTPM: 573.0
Min nTPM: 275.1
Std nTPM: 68.0
Median nTPM:
17_1 71 years, male 573.0
35_1 74 years, female 561.8
120_1 70 years, female 542.7
379_1 60 years, male 542.1
501_1 88 years, male 519.6
491_1 89 years, female 518.5
375_1 74 years, female 518.0
384_1 83 years, male 515.6
4_1 88 years, female 512.4
495_1 57 years, female 507.3
389_1 86 years, female 502.7
42_1 85 years, male 501.3
153_1 70 years, female 496.2
162_1 79 years, female 488.4
142_1 61 years, female 487.9
145_1 84 years, male 486.5
307_1 66 years, female 485.5
139_1 64 years, female 484.5
321_1 62 years, female 481.4
126_1 63 years, male 471.1
137_1 83 years, male 467.7
237_1 82 years, male 464.3
396_1 62 years, male 460.8
526_1 61 years, male 455.4
218_1 71 years, female 451.3
119_1 70 years, female 449.8
499_1 55 years, female 447.6
452_1 88 years, female 446.7
466_1 57 years, female 444.2
117_1 61 years, male 442.7
376_1 75 years, female 442.7
518_1 75 years, female 442.4
308_1 70 years, female 442.2
322_1 76 years, male 440.0
377_1 82 years, female 439.3
490_1 67 years, female 435.1
315_1 62 years, female 433.9
217_1 76 years, male 433.0
414_1 84 years, female 432.6
311_1 78 years, male 431.4
109_1 81 years, female 427.6
2_1 77 years, female 419.0
355_1 70 years, female 418.9
6_1 73 years, female 418.0
246_1 77 years, male 417.9
89_1 63 years, male 416.9
265_1 87 years, male 416.6
386_1 76 years, male 413.0
320_1 89 years, female 412.2
347_1 72 years, male 411.6
18_1 88 years, male 408.4
447_1 81 years, male 407.6
394_1 75 years, female 406.0
288_1 66 years, female 405.0
99_1 64 years, male 404.6
319_1 81 years, male 402.7
189_1 76 years, male 402.4
468_1 89 years, male 400.6
173_1 67 years, male 399.4
415_1 77 years, female 391.6
348_1 84 years, male 390.6
503_1 68 years, male 390.2
405_1 91 years, male 377.5
43_1 64 years, female 375.5
404_1 82 years, female 374.7
314_1 67 years, male 374.5
295_1 61 years, female 372.0
506_1 65 years, male 370.8
32_1 67 years, male 369.5
517_1 88 years, male 367.5
266_1 85 years, male 367.0
413_1 59 years, female 366.0
254_1 77 years, female 364.5
149_1 88 years, male 360.6
354_1 81 years, female 357.1
324_1 76 years, male 356.9
81_1 67 years, male 356.7
264_1 73 years, female 355.1
351_1 91 years, male 353.7
335_1 73 years, female 350.3
41_1 94 years, female 349.9
349_1 83 years, male 347.1
243_1 75 years, male 345.1
317_1 60 years, male 343.9
115_1 83 years, male 342.1
316_1 62 years, male 341.8
177_1 74 years, male 339.5
313_1 79 years, female 337.5
480_1 63 years, male 331.6
353_1 82 years, female 328.7
406_1 79 years, male 327.5
286_1 68 years, female 326.9
229_1 69 years, female 324.7
251_1 78 years, male 321.5
318_1 68 years, male 320.7
291_1 76 years, male 320.0
9_1 66 years, female 319.4
172_1 72 years, female 318.8
425_1 59 years, female 301.6
350_1 84 years, female 297.1
356_1 87 years, female 296.3
352_1 62 years, male 296.0
163_1 78 years, male 290.4
292_1 71 years, male 290.1
293_1 68 years, female 275.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

23.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 23.1
FF:10030-101E3 24-65 years, mixed 23.1

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