MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.2 nTPM
HPA Brain:23.4 nTPM
GTEx:9.2 nTPM
FANTOM5:37.9 Scaled Tags Per Million
Pig:10.5 nTPM
Mouse:17.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 23.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.1
2219 Male, age 76, both hemispheres 36.5
1870 Female, age 42, unknown 22.4
2019 Male, age 18, unknown 21.6
1827 Male, age 72, unknown 20.3
2828 Female, age 72, unknown 19.9
1830 Male, age 51, unknown 19.8
1833 Male, age 53, unknown 19.8
2411 Female, age 72, unknown 19.3
2666 Male, age 74, left hemisphere 16.8
2586 Male, age 75, left hemisphere 14.8
Dorsal raphe nucleus
nTPM: 20.0
2016 Female, age 72, unknown 24.0
1828 Male, age 53, unknown 21.2
2750 Male, age 76, both hemispheres 20.6
2047 Male, age 72, unknown 18.9
2298 Female, age 72, unknown 15.5
Inferior colliculus
nTPM: 23.4
2097 Female, age 72, unknown 25.1
1890 Male, age 53, unknown 24.5
1848 Female, age 42, unknown 22.8
2849 Male, age 72, unknown 21.0
Median raphe nucleus
nTPM: 18.4
2220 Male, age 76, midline 18.4
Periaquaductal grey, anterior
nTPM: 17.3
2502 Female, age 75, unknown 18.2
1795 Male, age 51, unknown 17.8
1947 Male, age 18, unknown 15.8
Periaquaductal grey, dorsal
nTPM: 21.7
1831 Male, age 72, unknown 23.0
2850 Male, age 76, both hemispheres 22.8
1840 Male, age 53, unknown 21.3
2464 Female, age 72, unknown 19.5
Periaquaductal grey, lateral
nTPM: 20.4
2272 Male, age 74, both hemispheres 21.2
2053 Male, age 18, unknown 20.7
2140 Male, age 76, both hemispheres 19.2
Pretectal area
nTPM: 22.3
2273 Male, age 74, both hemispheres 26.3
2667 Female, age 75, unknown 25.9
1944 Female, age 72, unknown 25.6
1816 Male, age 51, unknown 22.6
1815 Male, age 53, unknown 22.3
2224 Female, age 72, unknown 22.3
2407 Male, age 75, both hemispheres 22.3
1817 Female, age 42, unknown 20.8
2007 Male, age 72, unknown 20.3
2316 Male, age 76, right hemisphere 20.1
2825 Male, age 18, unknown 16.9
Red nucleus
nTPM: 19.9
2823 Male, age 76, right hemisphere 22.3
2785 Male, age 18, unknown 22.0
1865 Male, age 51, unknown 21.8
1904 Male, age 53, unknown 20.9
1954 Female, age 42, unknown 20.8
2503 Female, age 72, unknown 20.2
2227 Male, age 72, unknown 20.1
1821 Female, age 72, unknown 19.8
2725 Female, age 75, unknown 19.2
2769 Male, age 72, unknown 18.6
2588 Male, age 74, left hemisphere 16.4
2584 Male, age 75, left hemisphere 16.3
Substantia nigra
nTPM: 19.1
2409 Female, age 72, unknown 23.5
1889 Female, age 72, unknown 21.4
2699 Male, age 18, unknown 20.2
2241 Male, age 72, unknown 20.0
1916 Female, age 42, unknown 19.0
1851 Male, age 51, unknown 18.8
1941 Male, age 53, unknown 18.0
2590 Female, age 75, unknown 17.6
2583 Male, age 75, right hemisphere 17.5
2665 Male, age 74, both hemispheres 15.2
Superior colliculus
nTPM: 21.7
1913 Female, age 42, unknown 26.0
1995 Male, age 72, unknown 25.8
2087 Female, age 72, unknown 24.5
2261 Male, age 18, unknown 24.1
1839 Male, age 51, unknown 20.7
1895 Male, age 76, right hemisphere 20.4
2587 Male, age 74, left hemisphere 20.2
2668 Female, age 75, unknown 19.3
1796 Male, age 53, unknown 17.9
2664 Male, age 75, both hemispheres 17.5
Ventral tegmental area
nTPM: 19.5
2021 Male, age 53, unknown 21.7
2410 Female, age 72, unknown 20.0
2218 Male, age 76, both hemispheres 19.7
2223 Female, age 72, unknown 19.6
1942 Male, age 51, unknown 18.1
1915 Female, age 42, unknown 18.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.2
Samples: 183

Max nTPM: 18.5
Min nTPM: 4.2
Std nTPM: 2.6
Median nTPM: 9.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 18.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 18.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 17.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 17.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 15.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 14.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 14.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 14.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 14.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 14.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 14.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 37.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.9
FF:10158-103A5 76 years, female 37.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.2
Samples: 4

Max nTPM: 11.2
Min nTPM: 9.5
Sample A Female 10.6
Sample B Female 9.5
Sample C Male 9.6
Sample D Male 11.2
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 13.8
Min nTPM: 8.1
Sample A Female 13.8
Sample B Female 8.8
Sample C Male 11.1
Sample D Male 8.1
Periaqueductal gray
nTPM: 10.5
Samples: 3

Max nTPM: 12.4
Min nTPM: 9.4
Sample B Female 9.6
Sample C Male 9.4
Sample D Male 12.4
Superior colliculi
nTPM: 10.0
Samples: 4

Max nTPM: 10.3
Min nTPM: 9.7
Sample A Female 9.7
Sample B Female 9.8
Sample C Male 10.0
Sample D Male 10.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.6
Samples: 4

Max nTPM: 18.4
Min nTPM: 17.0
Sample A Male 17.7
Sample B Male 18.4
Sample C Female 17.1
Sample D Female 17.0

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