HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:63.3 nTPM
HPA Brain:129.5 nTPM
GTEx:63.3 nTPM
FANTOM5:103.7 Scaled Tags Per Million
Pig:73.3 nTPM
Mouse:143.8 nTPM
Allen mouse:12.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038051Antibody HPA059070Antibody CAB012448
Glial cells HighMediumHigh
Neuronal cells HighHighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 129.5
Sample id Sample description nTPM
Hippocampus
nTPM: 81.6
1898 Male, age 80, left hemisphere 95.4
2621 Female, age 67, right hemisphere 91.1
2148 Female, age 91, left hemisphere 83.0
2529 Female, age 94, left hemisphere 76.6
1855 Male, age 76, left hemisphere 74.2
1911 Female, age 85, right hemisphere 69.1
Dentate gyrus
nTPM: 88.4
2531 Female, age 67, both hemispheres 98.5
2528 Male, age 74, both hemispheres 95.7
1927 Female, age 91, both hemispheres 95.3
2530 Female, age 94, left hemisphere 87.3
2246 Female, age 85, both hemispheres 82.2
2010 Male, age 76, both hemispheres 71.2
Entorhinal gyrus
nTPM: 106.3
2613 Female, age 94, left hemisphere 128.5
2764 Male, age 80, right hemisphere 127.8
1787 Male, age 76, left hemisphere 110.3
1938 Female, age 85, left hemisphere 109.1
2117 Female, age 91, right hemisphere 85.7
2686 Male, age 75, right hemisphere 76.6
Hippocampus, CA1
nTPM: 87.9
2749 Male, age 80, left hemisphere 111.3
2527 Male, age 74, both hemispheres 89.7
2082 Female, age 91, right hemisphere 85.7
2045 Male, age 76, both hemispheres 80.6
1873 Female, age 85, both hemispheres 71.9
Hippocampus, CA2
nTPM: 92.4
2249 Male, age 74, both hemispheres 100.6
1892 Male, age 76, both hemispheres 100.4
2437 Female, age 94, left hemisphere 99.1
1940 Female, age 85, left hemisphere 87.0
1963 Male, age 80, left hemisphere 84.9
2113 Female, age 91, right hemisphere 82.5
Hippocampus, CA3
nTPM: 93.2
2620 Female, age 94, left hemisphere 106.5
2137 Male, age 80, left hemisphere 101.9
2436 Male, age 74, both hemispheres 101.7
1867 Male, age 76, both hemispheres 91.1
2861 Female, age 67, both hemispheres 84.2
1891 Female, age 85, both hemispheres 73.6
Parahippocampal cortex
nTPM: 99.4
1850 Male, age 80, both hemispheres 116.0
1990 Female, age 91, right hemisphere 113.7
2245 Female, age 91, both hemispheres 112.8
2532 Female, age 72, left hemisphere 111.7
2250 Female, age 67, right hemisphere 107.9
1933 Female, age 85, both hemispheres 97.5
2693 Female, age 94, both hemispheres 91.6
2622 Female, age 67, right hemisphere 88.1
2018 Male, age 76, both hemispheres 84.5
2692 Male, age 74, both hemispheres 70.6
Perirhinal gyrus
nTPM: 129.5
1847 Female, age 91, left hemisphere 147.9
1794 Male, age 80, right hemisphere 145.6
1841 Female, age 85, right hemisphere 126.5
2521 Female, age 94, right hemisphere 114.4
2848 Male, age 76, right hemisphere 113.0
Subiculum
nTPM: 88.6
2438 Female, age 94, left hemisphere 111.2
1977 Female, age 85, both hemispheres 110.4
1901 Male, age 80, both hemispheres 91.0
2619 Male, age 74, both hemispheres 83.2
2729 Female, age 91, right hemisphere 69.9
2042 Male, age 76, both hemispheres 65.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 63.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 63.3
Samples: 255

Max nTPM: 129.7
Min nTPM: 26.7
Std nTPM: 18.6
Median nTPM: 62.3
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 129.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 126.3
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 125.3
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 111.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 111.1
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 105.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 103.5
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 99.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 98.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 97.9
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 97.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 103.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 103.7
FF:10169-103B7 60 years, female 108.0
FF:10153-102I9 76 years, female 99.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 73.3
Pig sample Sample description nTPM
Subiculum
nTPM: 56.7
Samples: 4

Max nTPM: 76.8
Min nTPM: 45.4
Sample A Female 76.8
Sample B Female 49.0
Sample C Male 55.4
Sample D Male 45.4
Dorsal hippocampus
nTPM: 73.3
Samples: 4

Max nTPM: 94.5
Min nTPM: 57.0
Sample A Female 94.5
Sample B Female 77.8
Sample C Male 63.7
Sample D Male 57.0
Entorhinal cortex
nTPM: 57.0
Samples: 4

Max nTPM: 67.0
Min nTPM: 50.3
Sample A Female 67.0
Sample B Female 56.7
Sample C Male 53.9
Sample D Male 50.3
Ventral hippocampus
nTPM: 72.2
Samples: 4

Max nTPM: 87.1
Min nTPM: 44.5
Sample A Female 72.1
Sample B Female 44.5
Sample C Male 85.0
Sample D Male 87.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 143.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 142.4
Samples: 4

Max nTPM: 155.7
Min nTPM: 137.1
Sample A Male 138.5
Sample B Male 155.7
Sample C Female 137.1
Sample D Female 138.1
Hippocampal formation
nTPM: 143.8
Samples: 4

Max nTPM: 151.3
Min nTPM: 137.5
Sample A Male 139.1
Sample B Male 147.2
Sample C Female 137.5
Sample D Female 151.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 12.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.5
68191420 Antisense, RP_041129_01_B06, Mouse strain C57BL/6J (56 days, male) 12.5

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