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  • EIF4G2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:161.4 nTPM
HPA Brain:254.5 nTPM
GTEx:161.4 nTPM
FANTOM5:998.1 Scaled Tags Per Million
Pig:266.8 nTPM
Mouse:273.3 nTPM
Allen mouse:10.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

254.5
Sample id Sample description nTPM
Amygdala
nTPM: 254.5
2814 Male, age 76, right hemisphere 291.0
2695 Female, age 67, right hemisphere 287.9
2514 Male, age 75, right hemisphere 260.6
1987 Female, age 91, left hemisphere 227.1
2517 Female, age 94, left hemisphere 206.1
Basal amygdala
nTPM: 206.5
2609 Male, age 75, right hemisphere 258.5
2685 Female, age 94, left hemisphere 211.9
1955 Male, age 76, both hemispheres 210.5
2110 Male, age 80, left hemisphere 194.8
2827 Female, age 67, right hemisphere 181.8
2243 Female, age 91, right hemisphere 181.6
Central amygdala
nTPM: 235.1
2515 Male, age 75, right hemisphere 292.8
1905 Male, age 76, both hemispheres 264.6
2826 Female, age 94, left hemisphere 228.0
2239 Male, age 80, left hemisphere 196.4
2701 Female, age 91, right hemisphere 193.7
Corticomedial amygdala
nTPM: 194.1
2428 Male, age 75, right hemisphere 241.3
2829 Male, age 80, left hemisphere 205.9
2240 Male, age 76, both hemispheres 205.2
2242 Female, age 91, right hemisphere 178.1
2429 Female, age 94, left hemisphere 172.5
2535 Female, age 67, right hemisphere 161.7
Lateral amygdala
nTPM: 221.5
2516 Male, age 75, right hemisphere 263.5
1883 Male, age 76, both hemispheres 256.7
2534 Female, age 94, left hemisphere 219.1
2255 Female, age 91, right hemisphere 201.2
2256 Male, age 80, left hemisphere 194.6
2830 Female, age 67, right hemisphere 193.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 161.4
Samples: 181

Max nTPM: 297.4
Min nTPM: 91.6
Std nTPM: 28.2
Median nTPM: 157.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 297.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 232.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 224.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 222.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 219.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 218.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 216.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 214.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 212.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 212.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 208.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 206.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 205.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 201.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 200.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 199.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 198.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 198.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 197.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 197.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 196.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 196.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 196.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 196.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 195.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 194.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 191.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 191.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 190.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 189.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 188.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 187.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 187.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 186.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 184.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 183.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 182.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 181.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 181.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 180.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 180.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 180.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 178.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 178.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 177.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 176.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 176.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 174.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 174.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 173.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 173.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 173.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 173.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 173.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 172.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 172.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 171.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 170.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 170.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 170.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 169.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 169.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 168.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 168.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 168.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 168.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 167.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 167.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 167.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 166.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 166.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 166.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 165.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 165.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 165.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 165.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 164.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 163.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 162.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 162.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 162.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 160.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 159.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 159.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 158.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 158.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 158.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 158.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 158.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 158.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 157.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 157.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 156.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 156.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 156.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 156.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 156.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 156.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 155.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 155.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 155.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 155.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 155.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 154.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 154.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 153.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 153.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 153.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 152.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 152.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 151.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 151.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 151.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 151.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 151.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 150.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 149.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 149.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 149.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 147.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 147.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 147.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 146.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 146.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 146.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 146.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 146.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 146.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 145.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 145.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 145.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 145.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 144.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 144.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 144.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 144.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 143.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 142.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 142.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 142.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 142.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 142.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 140.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 139.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 138.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 137.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 136.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 136.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 136.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 135.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 134.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 134.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 133.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 133.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 133.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 132.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 132.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 131.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 131.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 129.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 129.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 129.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 128.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 127.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 126.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 125.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 124.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 124.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 123.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 123.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 123.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 122.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 120.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 118.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 118.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 116.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 113.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 110.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 109.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 105.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 91.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

998.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 998.1
FF:10151-102I7 76 years, female 998.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

266.8
Pig sample Sample description nTPM
Amygdala
nTPM: 266.8
Samples: 4

Max nTPM: 332.4
Min nTPM: 230.2
Sample A Female 332.4
Sample B Female 265.6
Sample C Male 239.0
Sample D Male 230.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

273.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 273.3
Samples: 4

Max nTPM: 279.0
Min nTPM: 268.1
Sample A Male 273.0
Sample B Male 268.1
Sample C Female 272.9
Sample D Female 279.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.3
69671965 Antisense, RP_050428_02_G01, Mouse strain C57BL/6J (56 days, male) 20.6
70795766 Antisense, RP_050712_01_H11, Mouse strain C57BL/6J (56 days, male) 0.0

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