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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Antibody HPA006773
Antibody HPA016965
Antibody CAB005163
Glial cells
Low
Not detected
Low
Neuronal cells
High
Medium
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
224.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 221.8
1898
Male, age 80, left hemisphere
261.0
2621
Female, age 67, right hemisphere
225.6
2529
Female, age 94, left hemisphere
222.9
1855
Male, age 76, left hemisphere
218.4
2148
Female, age 91, left hemisphere
207.4
1911
Female, age 85, right hemisphere
195.7
Dentate gyrus nTPM: 205.4
2010
Male, age 76, both hemispheres
237.6
2530
Female, age 94, left hemisphere
227.5
1927
Female, age 91, both hemispheres
217.0
2528
Male, age 74, both hemispheres
198.8
2246
Female, age 85, both hemispheres
192.6
2531
Female, age 67, both hemispheres
159.0
Entorhinal gyrus nTPM: 202.4
2117
Female, age 91, right hemisphere
227.5
1938
Female, age 85, left hemisphere
212.2
1787
Male, age 76, left hemisphere
206.2
2764
Male, age 80, right hemisphere
206.0
2613
Female, age 94, left hemisphere
185.0
2686
Male, age 75, right hemisphere
177.6
Hippocampus, CA1 nTPM: 220.0
2749
Male, age 80, left hemisphere
309.7
1873
Female, age 85, both hemispheres
241.2
2527
Male, age 74, both hemispheres
205.6
2045
Male, age 76, both hemispheres
172.4
2082
Female, age 91, right hemisphere
170.9
Hippocampus, CA2 nTPM: 223.1
1963
Male, age 80, left hemisphere
265.0
1892
Male, age 76, both hemispheres
264.3
2249
Male, age 74, both hemispheres
216.4
1940
Female, age 85, left hemisphere
204.9
2437
Female, age 94, left hemisphere
204.6
2113
Female, age 91, right hemisphere
183.6
Hippocampus, CA3 nTPM: 224.9
2436
Male, age 74, both hemispheres
288.5
1867
Male, age 76, both hemispheres
244.7
2137
Male, age 80, left hemisphere
243.4
1891
Female, age 85, both hemispheres
213.2
2620
Female, age 94, left hemisphere
189.7
2861
Female, age 67, both hemispheres
169.9
Parahippocampal cortex nTPM: 203.7
1850
Male, age 80, both hemispheres
240.3
2692
Male, age 74, both hemispheres
217.7
1990
Female, age 91, right hemisphere
211.0
2532
Female, age 72, left hemisphere
210.9
1933
Female, age 85, both hemispheres
208.9
2250
Female, age 67, right hemisphere
208.9
2245
Female, age 91, both hemispheres
206.3
2018
Male, age 76, both hemispheres
191.3
2622
Female, age 67, right hemisphere
176.3
2693
Female, age 94, both hemispheres
165.8
Perirhinal gyrus nTPM: 211.4
1847
Female, age 91, left hemisphere
228.2
1794
Male, age 80, right hemisphere
225.9
1841
Female, age 85, right hemisphere
224.0
2521
Female, age 94, right hemisphere
194.6
2848
Male, age 76, right hemisphere
184.1
Subiculum nTPM: 212.5
2619
Male, age 74, both hemispheres
231.8
1901
Male, age 80, both hemispheres
225.5
2042
Male, age 76, both hemispheres
214.7
1977
Female, age 85, both hemispheres
212.9
2438
Female, age 94, left hemisphere
197.7
2729
Female, age 91, right hemisphere
192.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
157.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 157.1
Samples: 255
Max nTPM: 252.8
Min nTPM: 56.6
Std nTPM: 28.8
Median nTPM: 153.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
252.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
240.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
238.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
229.8
GTEX-12ZZZ-0011-R1a-SM-GIN8I
60-69 years, male
226.1
GTEX-11ZUS-0011-R1a-SM-GI4W7
30-39 years, male
225.9
GTEX-12ZZY-0011-R1a-SM-GIN9E
60-69 years, male
225.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
222.3
GTEX-1192X-0011-R1b-SM-GI4VU
50-59 years, male
221.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
219.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
215.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
212.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
210.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
204.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
203.6
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
202.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
200.8
GTEX-15EO6-0011-R1b-SM-H7OGP
50-59 years, male
199.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
198.6
GTEX-12696-0011-R1a-SM-GHWPW
60-69 years, male
197.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
197.1
GTEX-1MJK2-0011-R1b-SM-F649H
50-59 years, male
195.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
195.0
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
194.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
194.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
194.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
193.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
191.2
GTEX-1JMQJ-0011-R1b-SM-F2T9P
50-59 years, male
190.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
189.1
GTEX-11TTK-0011-R1b-SM-GIN92
60-69 years, female
188.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
188.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
188.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
187.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
187.5
GTEX-ZYFD-0011-R1b-SM-GRR1T
50-59 years, male
187.2
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
186.9
GTEX-15SHU-0011-R1b-SM-H6Q7U
40-49 years, female
186.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
186.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
186.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
186.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
185.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
184.1
GTEX-1KANB-0011-R1a-SM-F3K5M
50-59 years, male
183.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
182.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
182.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
179.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
179.6
GTEX-13VXU-0011-R1a-SM-GINAT
50-59 years, male
178.9
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
178.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
178.5
GTEX-13PLJ-0011-R1a-SM-GJ3QF
60-69 years, female
177.8
GTEX-11H98-0011-R1a-SM-GIN8O
50-59 years, male
177.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
177.3
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
177.1
GTEX-1N2EE-0011-R1a-SM-F3K5K
60-69 years, male
177.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
176.9
GTEX-1NV8Z-0011-R1b-SM-F647K
60-69 years, male
176.9
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
176.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
176.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
176.2
GTEX-1N5O9-0011-R1b-SM-F3K4W
60-69 years, male
176.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
175.9
GTEX-13SLX-0011-R1a-SM-H6Q8N
50-59 years, female
175.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
175.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
173.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
173.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
173.3
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
173.1
GTEX-15RJE-0011-R1b-SM-H6Q7N
40-49 years, male
172.5
GTEX-1POEN-0011-R1b-SM-F3K3K
30-39 years, female
172.4
GTEX-12126-0011-R1a-SM-GJ3Q8
20-29 years, male
171.8
GTEX-1R9PO-0011-R1b-SM-F2I2G
60-69 years, female
171.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
171.1
GTEX-1PIIG-0011-R1a-SM-F649P
30-39 years, male
171.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
170.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
170.9
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
170.3
GTEX-1LVAO-0011-R1a-SM-F649O
60-69 years, male
169.7
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
169.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
169.4
GTEX-11NV4-0011-R1a-SM-GINAK
60-69 years, male
168.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
168.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
168.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
168.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
166.9
GTEX-11OF3-0011-R1b-SM-H65ZT
60-69 years, male
166.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
166.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
165.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
165.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
165.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
165.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
164.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
164.8
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
164.5
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
164.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
164.1
GTEX-ZAK1-0011-R1a-SM-GRR1R
50-59 years, female
164.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
163.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
163.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
163.6
GTEX-ZAJG-0011-R1a-SM-GQ1CV
50-59 years, female
163.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
162.9
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
162.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
162.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
162.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
162.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
162.0
GTEX-117XS-0011-R1b-SM-GJ3PQ
60-69 years, male
161.5
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
161.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
159.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
159.0
GTEX-11PRG-0011-R1b-SM-H7OHD
50-59 years, male
158.4
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
158.3
GTEX-1JN6P-0011-R1b-SM-G8LL3
60-69 years, male
158.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
157.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
157.6
GTEX-1R9K4-0011-R1a-SM-F342F
60-69 years, male
157.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
156.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
156.8
GTEX-ZZPT-0011-R1b-SM-GNINL
50-59 years, male
156.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
156.3
GTEX-1JMQK-0011-R1a-SM-F6484
60-69 years, male
156.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
155.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
155.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
155.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
154.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
153.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
153.2
GTEX-1OJC4-0011-R1a-SM-F2TAZ
50-59 years, female
153.1
GTEX-1P4AB-0011-R1b-SM-F2TAV
50-59 years, male
152.5
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
152.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
152.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
151.9
GTEX-1RNSC-0011-R1b-SM-F342D
60-69 years, male
151.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
151.5
GTEX-1KWVE-0011-R1a-SM-F649B
30-39 years, male
151.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
150.8
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
150.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
150.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
150.1
GTEX-ZYY3-0011-R1b-SM-GPI92
60-69 years, female
150.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
150.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
150.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
149.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
149.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
149.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
149.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
149.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
149.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
148.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
148.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
148.2
GTEX-14BMV-0011-R1b-SM-G9ERL
50-59 years, male
148.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
148.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
147.4
GTEX-1LSVX-0011-R1a-SM-F3K5F
60-69 years, male
147.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
146.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
146.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
146.5
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
146.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
146.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
146.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
145.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
145.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
145.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q
60-69 years, male
145.4
GTEX-11DYG-0011-R1a-SM-GI4X6
60-69 years, male
145.2
GTEX-1MCQQ-0011-R1a-SM-F341G
60-69 years, male
145.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
145.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
144.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
144.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
144.2
GTEX-1JMQL-0011-R1a-SM-F3K4U
50-59 years, female
144.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
143.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
143.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
143.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
142.4
GTEX-1JMPZ-0011-R1b-SM-F6497
30-39 years, male
141.6
GTEX-12WSA-0011-R1b-SM-GI4VI
60-69 years, male
141.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
141.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
141.0
GTEX-1LVA9-0011-R1b-SM-F2TB5
50-59 years, male
140.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
139.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
139.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
138.5
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
138.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
138.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
137.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
137.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
137.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
136.6
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
135.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
135.4
GTEX-RU72-0011-R1A-SM-HAUZG
50-59 years, female
135.0
GTEX-1LKK1-0011-R1b-SM-F2TAF
50-59 years, female
134.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
134.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
133.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
133.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
133.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
133.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
133.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
132.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
132.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
132.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
132.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
132.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
132.1
GTEX-1JJEA-0011-R1b-SM-F6495
60-69 years, male
131.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
131.4
GTEX-1QP6S-0011-R1b-SM-F3K59
40-49 years, male
131.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
131.0
GTEX-1I19N-0011-R1b-SM-GOR1A
70-79 years, male
130.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
130.1
GTEX-15DYW-0011-R1a-SM-H6Q6Q
60-69 years, female
130.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
129.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
129.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
129.7
GTEX-14JFF-0011-R1b-SM-G8W88
60-69 years, male
129.4
GTEX-1LSNL-0011-R1a-SM-F3K51
50-59 years, male
129.1
GTEX-1N2EF-0011-R1a-SM-F2TAT
60-69 years, male
128.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
127.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
126.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
126.1
GTEX-1O9I2-0011-R1a-SM-F2TAW
50-59 years, male
125.9
GTEX-1RQED-0011-R1a-SM-F3K5W
60-69 years, male
125.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
124.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
124.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
124.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
124.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
123.5
GTEX-1JMLX-0011-R1b-SM-G9ERV
50-59 years, male
123.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
123.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
123.2
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
123.0
GTEX-1F52S-0011-R1a-SM-9OSX9
60-69 years, female
123.0
GTEX-11DXY-0011-R1b-SM-GI4VQ
60-69 years, male
121.9
GTEX-13PVQ-0011-R1b-SM-GJ3RQ
50-59 years, male
121.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
121.2
GTEX-1JMOU-0011-R1b-SM-F341B
60-69 years, female
121.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
120.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
120.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
119.8
GTEX-1MA7X-0011-R1b-SM-F2TAB
60-69 years, male
117.5
GTEX-1RQEC-0011-R1b-SM-F2I2E
60-69 years, male
113.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
111.6
GTEX-1PPGY-0011-R1b-SM-G8LN3
60-69 years, male
109.1
GTEX-14DAQ-0011-R1a-SM-G8W85
60-69 years, female
102.3
GTEX-1LH75-0011-R1a-SM-F341Y
50-59 years, female
101.9
GTEX-1PWST-0011-R1b-SM-F2I38
70-79 years, male
99.7
GTEX-1RDX4-0011-R1a-SM-F3K5H
50-59 years, female
99.7
GTEX-1KD4Q-0011-R1a-SM-F3K4Z
40-49 years, male
96.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
94.1
GTEX-1JJ6O-0011-R1b-SM-F2I2M
60-69 years, male
92.5
GTEX-14E6C-0011-R1a-SM-G8W86
40-49 years, male
56.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
327.4
Pig sample
Sample description
nTPM
Subiculum nTPM: 320.3
Samples: 4
Max nTPM: 395.6
Min nTPM: 283.9
Sample A
Female
395.6
Sample B
Female
286.2
Sample C
Male
283.9
Sample D
Male
315.3
Dorsal hippocampus nTPM: 327.4
Samples: 4
Max nTPM: 402.1
Min nTPM: 259.2
Sample A
Female
402.1
Sample B
Female
297.4
Sample C
Male
351.0
Sample D
Male
259.2
Entorhinal cortex nTPM: 324.6
Samples: 4
Max nTPM: 348.3
Min nTPM: 287.8
Sample A
Female
336.4
Sample B
Female
348.3
Sample C
Male
325.9
Sample D
Male
287.8
Ventral hippocampus nTPM: 292.8
Samples: 4
Max nTPM: 329.6
Min nTPM: 242.2
Sample A
Female
329.6
Sample B
Female
242.2
Sample C
Male
303.9
Sample D
Male
295.5
HIPPOCAMPAL FORMATION - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
306.4
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 292.0
Samples: 4
Max nTPM: 300.6
Min nTPM: 285.2
Sample A
Male
285.2
Sample B
Male
289.7
Sample C
Female
292.4
Sample D
Female
300.6
Hippocampal formation nTPM: 306.4
Samples: 4
Max nTPM: 322.0
Min nTPM: 293.1
Sample A
Male
301.7
Sample B
Male
308.8
Sample C
Female
322.0
Sample D
Female
293.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.