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EIF4G2
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  • EIF4G2
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
Brain methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:157.1 nTPM
HPA Brain:224.9 nTPM
GTEx:157.1 nTPM
FANTOM5:1488.9 Scaled Tags Per Million
Pig:327.4 nTPM
Mouse:306.4 nTPM
Allen mouse:8.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA006773Antibody HPA016965Antibody CAB005163
Glial cells LowNot detectedLow
Neuronal cells HighMediumMedium






HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

224.9
Sample id Sample description nTPM
Hippocampus
nTPM: 221.8
1898 Male, age 80, left hemisphere 261.0
2621 Female, age 67, right hemisphere 225.6
2529 Female, age 94, left hemisphere 222.9
1855 Male, age 76, left hemisphere 218.4
2148 Female, age 91, left hemisphere 207.4
1911 Female, age 85, right hemisphere 195.7
Dentate gyrus
nTPM: 205.4
2010 Male, age 76, both hemispheres 237.6
2530 Female, age 94, left hemisphere 227.5
1927 Female, age 91, both hemispheres 217.0
2528 Male, age 74, both hemispheres 198.8
2246 Female, age 85, both hemispheres 192.6
2531 Female, age 67, both hemispheres 159.0
Entorhinal gyrus
nTPM: 202.4
2117 Female, age 91, right hemisphere 227.5
1938 Female, age 85, left hemisphere 212.2
1787 Male, age 76, left hemisphere 206.2
2764 Male, age 80, right hemisphere 206.0
2613 Female, age 94, left hemisphere 185.0
2686 Male, age 75, right hemisphere 177.6
Hippocampus, CA1
nTPM: 220.0
2749 Male, age 80, left hemisphere 309.7
1873 Female, age 85, both hemispheres 241.2
2527 Male, age 74, both hemispheres 205.6
2045 Male, age 76, both hemispheres 172.4
2082 Female, age 91, right hemisphere 170.9
Hippocampus, CA2
nTPM: 223.1
1963 Male, age 80, left hemisphere 265.0
1892 Male, age 76, both hemispheres 264.3
2249 Male, age 74, both hemispheres 216.4
1940 Female, age 85, left hemisphere 204.9
2437 Female, age 94, left hemisphere 204.6
2113 Female, age 91, right hemisphere 183.6
Hippocampus, CA3
nTPM: 224.9
2436 Male, age 74, both hemispheres 288.5
1867 Male, age 76, both hemispheres 244.7
2137 Male, age 80, left hemisphere 243.4
1891 Female, age 85, both hemispheres 213.2
2620 Female, age 94, left hemisphere 189.7
2861 Female, age 67, both hemispheres 169.9
Parahippocampal cortex
nTPM: 203.7
1850 Male, age 80, both hemispheres 240.3
2692 Male, age 74, both hemispheres 217.7
1990 Female, age 91, right hemisphere 211.0
2532 Female, age 72, left hemisphere 210.9
1933 Female, age 85, both hemispheres 208.9
2250 Female, age 67, right hemisphere 208.9
2245 Female, age 91, both hemispheres 206.3
2018 Male, age 76, both hemispheres 191.3
2622 Female, age 67, right hemisphere 176.3
2693 Female, age 94, both hemispheres 165.8
Perirhinal gyrus
nTPM: 211.4
1847 Female, age 91, left hemisphere 228.2
1794 Male, age 80, right hemisphere 225.9
1841 Female, age 85, right hemisphere 224.0
2521 Female, age 94, right hemisphere 194.6
2848 Male, age 76, right hemisphere 184.1
Subiculum
nTPM: 212.5
2619 Male, age 74, both hemispheres 231.8
1901 Male, age 80, both hemispheres 225.5
2042 Male, age 76, both hemispheres 214.7
1977 Female, age 85, both hemispheres 212.9
2438 Female, age 94, left hemisphere 197.7
2729 Female, age 91, right hemisphere 192.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 157.1
Samples: 255

Max nTPM: 252.8
Min nTPM: 56.6
Std nTPM: 28.8
Median nTPM: 153.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 252.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 240.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 238.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 229.8
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 226.1
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 225.9
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 225.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 222.3
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 221.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 219.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 215.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 212.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 210.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 204.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 203.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 202.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 200.8
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 199.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 198.6
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 197.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 197.1
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 195.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 195.0
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 194.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 194.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 194.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 193.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 191.2
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 190.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 189.1
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 188.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 188.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 188.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 187.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 187.5
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 187.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 186.9
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 186.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 186.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 186.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 186.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 185.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 184.1
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 183.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 182.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 182.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 179.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 179.6
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 178.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 178.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 178.5
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 177.8
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 177.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 177.3
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 177.1
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 177.0
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 176.9
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 176.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 176.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 176.8
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 176.2
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 176.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 175.9
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 175.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 175.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 173.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 173.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 173.3
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 173.1
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 172.5
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 172.4
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 171.8
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 171.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 171.1
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 171.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 170.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 170.9
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 170.3
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 169.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 169.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 169.4
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 168.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 168.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 168.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 168.7
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 166.9
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 166.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 166.2
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 165.7
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 165.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 165.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 165.0
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 164.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 164.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 164.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 164.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 164.1
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 164.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 163.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 163.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 163.6
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 163.2
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 162.9
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 162.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 162.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 162.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 162.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 162.0
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 161.5
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 161.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 159.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 159.0
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 158.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 158.3
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 158.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 157.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 157.6
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 157.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 156.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 156.8
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 156.6
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 156.3
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 156.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 155.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 155.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 155.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 154.9
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 153.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 153.2
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 153.1
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 152.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 152.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 152.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 151.9
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 151.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 151.5
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 151.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 150.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 150.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 150.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 150.1
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 150.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 150.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 150.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 149.4
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 149.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 149.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 149.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 149.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 149.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 148.9
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 148.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 148.2
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 148.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 148.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 147.4
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 147.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 146.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 146.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 146.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 146.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 146.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 146.0
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 145.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 145.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 145.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 145.4
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 145.2
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 145.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 145.0
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 144.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 144.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 144.2
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 144.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 143.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 143.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 143.3
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 142.4
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 141.6
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 141.5
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 141.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 141.0
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 140.3
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 139.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 139.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 138.5
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 138.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 138.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 137.7
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 137.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 137.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 136.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 135.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 135.4
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 135.0
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 134.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 134.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 133.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 133.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 133.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 133.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 133.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 132.8
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 132.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 132.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 132.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 132.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 132.1
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 131.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 131.4
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 131.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 131.0
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 130.7
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 130.1
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 130.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 129.8
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 129.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 129.7
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 129.4
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 129.1
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 128.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 127.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 126.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 126.1
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 125.9
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 125.9
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 124.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 124.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 124.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 124.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 123.5
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 123.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 123.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 123.2
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 123.0
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 123.0
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 121.9
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 121.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 121.2
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 121.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 120.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 120.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 119.8
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 117.5
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 113.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 111.6
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 109.1
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 102.3
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 101.9
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 99.7
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 99.7
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 96.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 94.1
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 92.5
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 56.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1488.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1488.9
FF:10169-103B7 60 years, female 1950.4
FF:10153-102I9 76 years, female 1027.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

327.4
Pig sample Sample description nTPM
Subiculum
nTPM: 320.3
Samples: 4

Max nTPM: 395.6
Min nTPM: 283.9
Sample A Female 395.6
Sample B Female 286.2
Sample C Male 283.9
Sample D Male 315.3
Dorsal hippocampus
nTPM: 327.4
Samples: 4

Max nTPM: 402.1
Min nTPM: 259.2
Sample A Female 402.1
Sample B Female 297.4
Sample C Male 351.0
Sample D Male 259.2
Entorhinal cortex
nTPM: 324.6
Samples: 4

Max nTPM: 348.3
Min nTPM: 287.8
Sample A Female 336.4
Sample B Female 348.3
Sample C Male 325.9
Sample D Male 287.8
Ventral hippocampus
nTPM: 292.8
Samples: 4

Max nTPM: 329.6
Min nTPM: 242.2
Sample A Female 329.6
Sample B Female 242.2
Sample C Male 303.9
Sample D Male 295.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

306.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 292.0
Samples: 4

Max nTPM: 300.6
Min nTPM: 285.2
Sample A Male 285.2
Sample B Male 289.7
Sample C Female 292.4
Sample D Female 300.6
Hippocampal formation
nTPM: 306.4
Samples: 4

Max nTPM: 322.0
Min nTPM: 293.1
Sample A Male 301.7
Sample B Male 308.8
Sample C Female 322.0
Sample D Female 293.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.7
69671965 Antisense, RP_050428_02_G01, Mouse strain C57BL/6J (56 days, male) 17.4
70795766 Antisense, RP_050712_01_H11, Mouse strain C57BL/6J (56 days, male) 0.1

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