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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • EIF4G2
EVOLUTIONARY MIDBRAIN Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:191.9 nTPM
HPA Brain:362.9 nTPM
GTEx:191.9 nTPM
FANTOM5:1082.0 Scaled Tags Per Million
Macaque:278.1 nTPM
Mouse:190.8 nTPM
Rat:268.2 nTPM
Pig:424.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

362.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 252.6
2586 Male, age 75, left hemisphere 284.5
2666 Male, age 74, left hemisphere 271.1
1870 Female, age 42, unknown 261.4
2019 Male, age 18, unknown 259.3
2411 Female, age 72, unknown 250.0
1827 Male, age 72, unknown 245.2
2219 Male, age 76, both hemispheres 243.6
2828 Female, age 72, unknown 242.1
1833 Male, age 53, unknown 239.6
1830 Male, age 51, unknown 229.5
Dorsal raphe nucleus
nTPM: 299.3
2047 Male, age 72, unknown 383.7
2750 Male, age 76, both hemispheres 306.7
2298 Female, age 72, unknown 293.1
1828 Male, age 53, unknown 273.8
2016 Female, age 72, unknown 239.5
Inferior colliculus
nTPM: 234.9
1890 Male, age 53, unknown 246.8
2097 Female, age 72, unknown 234.5
1848 Female, age 42, unknown 232.5
2849 Male, age 72, unknown 225.8
Median raphe nucleus
nTPM: 362.9
2220 Male, age 76, midline 362.9
Periaquaductal grey, anterior
nTPM: 248.9
1947 Male, age 18, unknown 275.6
1795 Male, age 51, unknown 244.6
2502 Female, age 75, unknown 226.6
Periaquaductal grey, dorsal
nTPM: 245.8
2850 Male, age 76, both hemispheres 276.8
1840 Male, age 53, unknown 251.5
1831 Male, age 72, unknown 242.0
2464 Female, age 72, unknown 213.0
Periaquaductal grey, lateral
nTPM: 230.1
2053 Male, age 18, unknown 233.3
2140 Male, age 76, both hemispheres 228.6
2272 Male, age 74, both hemispheres 228.4
Pretectal area
nTPM: 266.0
1817 Female, age 42, unknown 312.9
1816 Male, age 51, unknown 310.9
1944 Female, age 72, unknown 301.5
1815 Male, age 53, unknown 297.6
2007 Male, age 72, unknown 284.7
2667 Female, age 75, unknown 270.5
2407 Male, age 75, both hemispheres 257.2
2273 Male, age 74, both hemispheres 231.5
2224 Female, age 72, unknown 228.2
2825 Male, age 18, unknown 228.2
2316 Male, age 76, right hemisphere 202.8
Red nucleus
nTPM: 258.3
1821 Female, age 72, unknown 314.6
2725 Female, age 75, unknown 306.4
1954 Female, age 42, unknown 262.4
2503 Female, age 72, unknown 261.1
1904 Male, age 53, unknown 259.2
1865 Male, age 51, unknown 259.0
2584 Male, age 75, left hemisphere 254.2
2785 Male, age 18, unknown 252.4
2588 Male, age 74, left hemisphere 250.6
2769 Male, age 72, unknown 231.1
2227 Male, age 72, unknown 224.5
2823 Male, age 76, right hemisphere 223.5
Substantia nigra
nTPM: 306.8
1916 Female, age 42, unknown 368.7
2241 Male, age 72, unknown 332.0
1851 Male, age 51, unknown 330.5
2665 Male, age 74, both hemispheres 318.5
1941 Male, age 53, unknown 306.4
1889 Female, age 72, unknown 301.3
2409 Female, age 72, unknown 300.5
2699 Male, age 18, unknown 293.9
2583 Male, age 75, right hemisphere 275.9
2590 Female, age 75, unknown 240.3
Superior colliculus
nTPM: 253.2
2664 Male, age 75, both hemispheres 296.9
2668 Female, age 75, unknown 286.0
2087 Female, age 72, unknown 266.7
2261 Male, age 18, unknown 265.4
1796 Male, age 53, unknown 247.5
2587 Male, age 74, left hemisphere 243.4
1913 Female, age 42, unknown 241.6
1895 Male, age 76, right hemisphere 230.4
1995 Male, age 72, unknown 227.0
1839 Male, age 51, unknown 226.9
Ventral tegmental area
nTPM: 277.2
1915 Female, age 42, unknown 297.3
2218 Male, age 76, both hemispheres 297.1
2223 Female, age 72, unknown 275.8
2410 Female, age 72, unknown 268.0
1942 Male, age 51, unknown 265.9
2021 Male, age 53, unknown 259.3

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 191.9
Samples: 183

Max nTPM: 346.0
Min nTPM: 103.8
Std nTPM: 34.8
Median nTPM: 191.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 346.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 302.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 296.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 280.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 260.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 260.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 254.1
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 253.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 253.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 251.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 247.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 241.9
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 240.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 239.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 238.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 237.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 237.1
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 235.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 234.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 233.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 228.8
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 228.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 226.9
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 226.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 226.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 226.0
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 225.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 225.4
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 225.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 224.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 220.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 220.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 220.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 219.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 219.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 218.8
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 218.1
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 217.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 217.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 217.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 216.7
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 216.4
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 214.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 213.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 212.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 212.2
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 210.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 210.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 210.2
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 210.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 209.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 208.5
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 208.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 208.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 206.8
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 205.4
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 204.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 204.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 203.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 203.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 203.0
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 201.6
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 201.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 201.0
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 200.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 199.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 199.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 197.4
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 197.4
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 197.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 196.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 196.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 196.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 196.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 195.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 195.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 194.7
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 194.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 194.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 194.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 194.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 194.0
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 193.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 193.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 193.6
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 193.5
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 193.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 193.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 192.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 191.8
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 191.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 191.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 189.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 189.1
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 188.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 187.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 186.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 184.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 184.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 184.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 184.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 184.3
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 182.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 182.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 182.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 182.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 182.0
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 180.3
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 179.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 179.7
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 179.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 178.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 178.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 178.1
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 178.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 177.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 177.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 177.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 177.6
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 177.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 177.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 177.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 175.9
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 175.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 175.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 175.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 175.0
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 175.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 174.4
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 173.9
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 172.9
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 172.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 172.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 172.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 171.4
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 170.8
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 170.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 169.9
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 169.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 169.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 169.3
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 169.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 168.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 168.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 168.2
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 168.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 167.6
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 167.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 165.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 165.4
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 165.2
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 163.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 162.9
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 161.5
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 158.9
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 158.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 158.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 157.4
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 157.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 156.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 156.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 156.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 155.1
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 154.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 154.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 153.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 152.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 147.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 147.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 146.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 146.5
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 145.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 144.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 143.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 141.3
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 140.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 136.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 128.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 127.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 122.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 110.5
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 105.3
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 103.8
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1082.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1082.0
FF:10158-103A5 76 years, female 1082.0

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

278.1
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 252.7
Samples: 1

Max nTPM: 252.7
Min nTPM: 252.7
Sample A 252.7
Midbrain
nTPM: 278.1
Samples: 1

Max nTPM: 278.1
Min nTPM: 278.1
Sample A 278.1
Superior colliculi
nTPM: 268.5
Samples: 1

Max nTPM: 268.5
Min nTPM: 268.5
Sample A 268.5

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

424.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 376.4
Samples: 3

Max nTPM: 415.7
Min nTPM: 340.0
Sample A Female 415.7
Sample B Female 340.0
Sample C Male 373.4
Midbrain
nTPM: 373.7
Samples: 3

Max nTPM: 431.4
Min nTPM: 328.6
Sample B Female 361.2
Sample C Male 431.4
Sample D Male 328.6
Periaqueductal gray
nTPM: 323.9
Samples: 3

Max nTPM: 340.2
Min nTPM: 310.6
Sample B Female 320.8
Sample C Male 340.2
Sample D Male 310.6
Superior colliculi
nTPM: 424.8
Samples: 4

Max nTPM: 440.9
Min nTPM: 400.1
Sample A Female 430.3
Sample B Female 427.9
Sample C Male 440.9
Sample D Male 400.1

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 190.8
Samples: 4

Max nTPM: 200.7
Min nTPM: 183.3
Sample A 183.3
Sample B 185.3
Sample C 193.9
Sample D 200.7

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

268.2
Rat sample Sample description nTPM
Midbrain
nTPM: 268.2
Samples: 4

Max nTPM: 271.8
Min nTPM: 263.6
Sample A 267.6
Sample A 271.8
Sample A 263.6
Sample A 269.8

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