BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:690.8 nTPM
HPA Brain:724.3 nTPM
GTEx:690.8 nTPM
FANTOM5:762.6 Scaled Tags Per Million
Macaque:388.7 nTPM
Mouse:624.4 nTPM
Rat:13.3 nTPM
Pig:681.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 724.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 578.6
2586 Male, age 75, left hemisphere 776.9
2828 Female, age 72, unknown 750.7
2666 Male, age 74, left hemisphere 588.3
2411 Female, age 72, unknown 585.6
1827 Male, age 72, unknown 567.4
1870 Female, age 42, unknown 563.3
2019 Male, age 18, unknown 534.7
1833 Male, age 53, unknown 530.0
1830 Male, age 51, unknown 500.6
2219 Male, age 76, both hemispheres 388.7
Dorsal raphe nucleus
nTPM: 718.5
2298 Female, age 72, unknown 885.3
2016 Female, age 72, unknown 827.0
1828 Male, age 53, unknown 651.9
2047 Male, age 72, unknown 632.6
2750 Male, age 76, both hemispheres 595.6
Inferior colliculus
nTPM: 565.6
2097 Female, age 72, unknown 640.8
1890 Male, age 53, unknown 567.4
1848 Female, age 42, unknown 554.6
2849 Male, age 72, unknown 499.6
Median raphe nucleus
nTPM: 464.9
2220 Male, age 76, midline 464.9
Periaquaductal grey, anterior
nTPM: 711.9
1795 Male, age 51, unknown 766.7
1947 Male, age 18, unknown 716.6
2502 Female, age 75, unknown 652.5
Periaquaductal grey, dorsal
nTPM: 667.6
2850 Male, age 76, both hemispheres 721.9
1840 Male, age 53, unknown 710.0
2464 Female, age 72, unknown 635.9
1831 Male, age 72, unknown 602.6
Periaquaductal grey, lateral
nTPM: 724.3
2140 Male, age 76, both hemispheres 803.9
2053 Male, age 18, unknown 689.4
2272 Male, age 74, both hemispheres 679.7
Pretectal area
nTPM: 628.6
2273 Male, age 74, both hemispheres 790.9
2316 Male, age 76, right hemisphere 683.6
2224 Female, age 72, unknown 677.1
2825 Male, age 18, unknown 637.1
1817 Female, age 42, unknown 633.1
2667 Female, age 75, unknown 629.2
1815 Male, age 53, unknown 612.7
1944 Female, age 72, unknown 601.5
1816 Male, age 51, unknown 576.4
2007 Male, age 72, unknown 573.0
2407 Male, age 75, both hemispheres 499.5
Red nucleus
nTPM: 596.1
2503 Female, age 72, unknown 703.5
2227 Male, age 72, unknown 679.6
2769 Male, age 72, unknown 657.8
1954 Female, age 42, unknown 626.3
1821 Female, age 72, unknown 613.0
1904 Male, age 53, unknown 610.4
2725 Female, age 75, unknown 603.5
1865 Male, age 51, unknown 601.1
2785 Male, age 18, unknown 567.5
2823 Male, age 76, right hemisphere 534.1
2588 Male, age 74, left hemisphere 512.8
2584 Male, age 75, left hemisphere 443.9
Substantia nigra
nTPM: 582.9
1916 Female, age 42, unknown 656.7
1851 Male, age 51, unknown 653.9
2590 Female, age 75, unknown 628.3
2699 Male, age 18, unknown 610.4
2665 Male, age 74, both hemispheres 583.6
2583 Male, age 75, right hemisphere 572.3
1889 Female, age 72, unknown 566.5
2241 Male, age 72, unknown 533.4
2409 Female, age 72, unknown 513.3
1941 Male, age 53, unknown 510.4
Superior colliculus
nTPM: 616.3
1995 Male, age 72, unknown 793.6
1796 Male, age 53, unknown 677.8
2261 Male, age 18, unknown 654.8
2087 Female, age 72, unknown 643.4
2664 Male, age 75, both hemispheres 627.7
1913 Female, age 42, unknown 614.7
2668 Female, age 75, unknown 596.9
2587 Male, age 74, left hemisphere 582.3
1839 Male, age 51, unknown 546.8
1895 Male, age 76, right hemisphere 425.0
Ventral tegmental area
nTPM: 618.6
1942 Male, age 51, unknown 684.0
2021 Male, age 53, unknown 676.6
2410 Female, age 72, unknown 651.7
1915 Female, age 42, unknown 625.3
2218 Male, age 76, both hemispheres 549.9
2223 Female, age 72, unknown 524.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 690.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 690.8
Samples: 183

Max nTPM: 1700.5
Min nTPM: 248.7
Std nTPM: 274.7
Median nTPM: 644.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1700.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1672.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1655.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1601.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1599.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1470.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1455.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1317.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1190.6
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 1188.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1154.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 762.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 762.6
FF:10158-103A5 76 years, female 762.6

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 388.7
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 373.6
Samples: 1

Max nTPM: 373.6
Min nTPM: 373.6
Sample A 373.6
Midbrain
nTPM: 343.0
Samples: 1

Max nTPM: 343.0
Min nTPM: 343.0
Sample A 343.0
Superior colliculi
nTPM: 388.7
Samples: 1

Max nTPM: 388.7
Min nTPM: 388.7
Sample A 388.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 681.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 681.5
Samples: 3

Max nTPM: 792.1
Min nTPM: 568.8
Sample A Female 792.1
Sample B Female 568.8
Sample C Male 683.7
Midbrain
nTPM: 488.8
Samples: 3

Max nTPM: 543.2
Min nTPM: 436.7
Sample B Female 543.2
Sample C Male 486.6
Sample D Male 436.7
Periaqueductal gray
nTPM: 593.8
Samples: 3

Max nTPM: 697.6
Min nTPM: 531.5
Sample B Female 552.4
Sample C Male 697.6
Sample D Male 531.5
Superior colliculi
nTPM: 530.2
Samples: 4

Max nTPM: 677.1
Min nTPM: 370.7
Sample A Female 677.1
Sample B Female 370.7
Sample C Male 499.6
Sample D Male 573.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 624.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 624.4
Samples: 4

Max nTPM: 649.2
Min nTPM: 607.5
Sample A 619.2
Sample B 607.5
Sample C 649.2
Sample D 621.5

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 13.3
Rat sample Sample description nTPM
Midbrain
nTPM: 13.3
Samples: 4

Max nTPM: 17.0
Min nTPM: 9.8
Sample A 13.6
Sample A 12.7
Sample A 9.8
Sample A 17.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo