MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:173.0 nTPM
HPA Brain:180.9 nTPM
GTEx:173.0 nTPM
FANTOM5:555.7 Scaled Tags Per Million
Pig:282.3 nTPM
Mouse:99.1 nTPM
Allen mouse:7.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 180.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 143.7
1870 Female, age 42, unknown 180.4
2411 Female, age 72, unknown 157.2
2019 Male, age 18, unknown 155.9
1833 Male, age 53, unknown 147.7
1830 Male, age 51, unknown 145.8
2586 Male, age 75, left hemisphere 133.9
1827 Male, age 72, unknown 132.6
2828 Female, age 72, unknown 128.4
2219 Male, age 76, both hemispheres 127.9
2666 Male, age 74, left hemisphere 127.4
Dorsal raphe nucleus
nTPM: 162.4
2298 Female, age 72, unknown 173.7
2047 Male, age 72, unknown 167.0
2750 Male, age 76, both hemispheres 161.8
2016 Female, age 72, unknown 157.6
1828 Male, age 53, unknown 152.0
Inferior colliculus
nTPM: 134.1
2097 Female, age 72, unknown 141.8
1848 Female, age 42, unknown 135.6
1890 Male, age 53, unknown 134.4
2849 Male, age 72, unknown 124.4
Median raphe nucleus
nTPM: 180.9
2220 Male, age 76, midline 180.9
Periaquaductal grey, anterior
nTPM: 145.6
1947 Male, age 18, unknown 156.9
2502 Female, age 75, unknown 149.9
1795 Male, age 51, unknown 129.9
Periaquaductal grey, dorsal
nTPM: 145.2
2850 Male, age 76, both hemispheres 178.9
1840 Male, age 53, unknown 148.3
1831 Male, age 72, unknown 128.5
2464 Female, age 72, unknown 125.0
Periaquaductal grey, lateral
nTPM: 150.7
2272 Male, age 74, both hemispheres 155.7
2140 Male, age 76, both hemispheres 155.6
2053 Male, age 18, unknown 140.7
Pretectal area
nTPM: 146.2
2273 Male, age 74, both hemispheres 169.7
2224 Female, age 72, unknown 162.6
2667 Female, age 75, unknown 161.1
1817 Female, age 42, unknown 146.7
1815 Male, age 53, unknown 143.9
2825 Male, age 18, unknown 142.4
2007 Male, age 72, unknown 141.0
1816 Male, age 51, unknown 139.0
1944 Female, age 72, unknown 135.5
2407 Male, age 75, both hemispheres 134.4
2316 Male, age 76, right hemisphere 131.5
Red nucleus
nTPM: 152.0
1821 Female, age 72, unknown 190.8
1865 Male, age 51, unknown 172.8
2725 Female, age 75, unknown 168.1
1904 Male, age 53, unknown 167.1
1954 Female, age 42, unknown 161.9
2785 Male, age 18, unknown 156.1
2503 Female, age 72, unknown 155.8
2769 Male, age 72, unknown 141.5
2227 Male, age 72, unknown 141.4
2823 Male, age 76, right hemisphere 137.9
2588 Male, age 74, left hemisphere 116.9
2584 Male, age 75, left hemisphere 114.0
Substantia nigra
nTPM: 173.0
2241 Male, age 72, unknown 256.1
1916 Female, age 42, unknown 199.8
2409 Female, age 72, unknown 187.8
1851 Male, age 51, unknown 181.8
1941 Male, age 53, unknown 174.3
1889 Female, age 72, unknown 163.6
2699 Male, age 18, unknown 160.1
2665 Male, age 74, both hemispheres 146.2
2590 Female, age 75, unknown 131.0
2583 Male, age 75, right hemisphere 129.3
Superior colliculus
nTPM: 137.9
2587 Male, age 74, left hemisphere 157.7
1913 Female, age 42, unknown 155.1
1895 Male, age 76, right hemisphere 143.7
2668 Female, age 75, unknown 139.4
1796 Male, age 53, unknown 136.6
1839 Male, age 51, unknown 134.7
1995 Male, age 72, unknown 133.9
2261 Male, age 18, unknown 130.1
2664 Male, age 75, both hemispheres 124.8
2087 Female, age 72, unknown 122.6
Ventral tegmental area
nTPM: 159.8
2223 Female, age 72, unknown 175.8
1915 Female, age 42, unknown 174.8
2410 Female, age 72, unknown 158.4
2218 Male, age 76, both hemispheres 156.6
1942 Male, age 51, unknown 151.5
2021 Male, age 53, unknown 141.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 173.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 173.0
Samples: 183

Max nTPM: 525.2
Min nTPM: 104.5
Std nTPM: 61.6
Median nTPM: 162.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 525.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 502.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 475.4
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 407.9
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 393.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 311.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 301.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 283.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 271.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 265.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 258.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 555.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 555.7
FF:10158-103A5 76 years, female 555.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 282.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 259.4
Samples: 4

Max nTPM: 309.8
Min nTPM: 207.1
Sample A Female 309.8
Sample B Female 207.1
Sample C Male 271.9
Sample D Male 248.6
Midbrain
nTPM: 282.3
Samples: 4

Max nTPM: 393.2
Min nTPM: 222.0
Sample A Female 393.2
Sample B Female 272.8
Sample C Male 241.2
Sample D Male 222.0
Periaqueductal gray
nTPM: 254.6
Samples: 3

Max nTPM: 274.3
Min nTPM: 237.9
Sample B Female 237.9
Sample C Male 274.3
Sample D Male 251.6
Superior colliculi
nTPM: 252.3
Samples: 4

Max nTPM: 289.0
Min nTPM: 180.5
Sample A Female 289.0
Sample B Female 180.5
Sample C Male 269.9
Sample D Male 269.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 99.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.1
Samples: 4

Max nTPM: 102.0
Min nTPM: 96.9
Sample A Male 99.7
Sample B Male 102.0
Sample C Female 97.8
Sample D Female 96.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
75214937 Antisense, RP_060427_01_A04, Mouse strain C57BL/6J (56 days, male) 7.8

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