We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PTGES3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • PTGES3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:209.3 nTPM
HPA Brain:179.9 nTPM
GTEx:209.3 nTPM
FANTOM5:567.2 Scaled Tags Per Million
Pig:292.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 179.9
1981 Female, age 72, midline 206.9
2048 Male, age 55, midline 200.7
2565 Male, age 75, midline 176.3
2194 Female, age 79, both hemispheres 158.9
2816 Male, age 47, midline 156.7
Cervical spinal cord, dorsal horn
nTPM: 178.9
2296 Male, age 66, both hemispheres 247.5
2173 Female, age 72, unknown 227.0
2069 Male, age 47, both hemispheres 194.8
1877 Male, age 55, unknown 150.1
2721 Male, age 90, both hemispheres 132.7
2297 Male, age 75, both hemispheres 121.2
Cervical spinal cord, ventral horn
nTPM: 162.4
2098 Female, age 72, unknown 213.8
2809 Male, age 90, both hemispheres 170.3
2480 Male, age 75, both hemispheres 164.0
2068 Male, age 55, unknown 161.6
2295 Male, age 66, both hemispheres 135.5
2820 Female, age 79, both hemispheres 129.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

209.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 209.3
Samples: 204

Max nTPM: 865.0
Min nTPM: 113.1
Std nTPM: 73.6
Median nTPM: 195.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 865.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 518.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 491.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 464.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 437.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 413.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 387.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 340.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 337.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 291.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 276.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 274.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 270.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 269.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 269.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 266.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 266.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 261.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 258.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 258.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 255.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 255.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 253.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 251.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 249.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 248.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 248.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 246.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 246.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 245.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 244.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 244.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 244.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 243.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 242.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 240.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 238.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 237.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 237.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 235.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 235.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 235.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 234.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 234.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 233.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 233.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 231.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 231.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 229.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 228.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 228.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 226.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 226.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 225.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 223.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 223.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 223.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 222.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 221.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 221.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 221.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 219.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 218.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 218.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 217.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 217.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 215.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 215.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 214.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 213.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 213.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 212.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 212.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 211.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 211.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 208.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 206.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 206.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 206.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 205.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 205.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 204.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 204.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 204.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 204.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 203.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 203.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 202.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 202.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 202.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 201.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 201.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 201.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 200.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 200.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 199.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 199.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 198.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 198.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 197.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 196.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 196.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 195.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 195.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 195.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 195.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 195.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 194.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 194.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 193.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 193.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 193.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 193.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 193.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 192.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 192.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 192.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 191.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 191.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 191.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 191.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 190.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 189.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 188.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 187.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 187.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 186.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 185.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 185.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 185.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 184.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 183.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 183.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 183.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 182.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 182.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 182.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 180.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 180.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 179.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 179.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 179.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 179.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 177.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 176.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 176.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 175.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 175.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 175.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 175.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 174.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 174.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 173.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 172.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 172.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 171.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 171.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 171.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 170.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 170.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 168.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 168.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 167.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 167.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 166.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 166.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 164.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 164.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 163.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 163.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 163.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 162.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 161.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 161.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 161.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 160.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 156.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 155.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 153.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 153.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 153.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 152.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 152.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 151.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 149.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 148.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 148.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 147.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 147.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 146.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 146.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 146.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 142.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 141.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 140.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 138.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 136.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 136.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 132.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 131.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 130.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 124.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 124.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 113.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

567.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 567.2
FF:10181-103D1 60 years, female 606.7
FF:10159-103A6 76 years, female 527.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

292.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 265.1
Samples: 4

Max nTPM: 281.2
Min nTPM: 244.6
Sample A Female 244.6
Sample B Female 281.2
Sample C Male 263.0
Sample D Male 271.6
Ventral spinal cord
nTPM: 292.4
Samples: 4

Max nTPM: 322.9
Min nTPM: 279.8
Sample A Female 279.8
Sample B Female 284.9
Sample C Male 282.1
Sample D Male 322.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo