BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.4 nTPM
HPA Brain:84.0 nTPM
GTEx:57.4 nTPM
FANTOM5:200.1 Scaled Tags Per Million
Macaque:49.2 nTPM
Mouse:25.5 nTPM
Rat:38.1 nTPM
Pig:91.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 84.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.1
2019 Male, age 18, unknown 81.7
1870 Female, age 42, unknown 80.7
2411 Female, age 72, unknown 78.7
1833 Male, age 53, unknown 75.0
1830 Male, age 51, unknown 73.7
2828 Female, age 72, unknown 69.7
2219 Male, age 76, both hemispheres 68.8
1827 Male, age 72, unknown 66.8
2666 Male, age 74, left hemisphere 61.5
2586 Male, age 75, left hemisphere 54.7
Dorsal raphe nucleus
nTPM: 65.2
2750 Male, age 76, both hemispheres 78.3
2298 Female, age 72, unknown 71.2
2016 Female, age 72, unknown 64.0
1828 Male, age 53, unknown 59.8
2047 Male, age 72, unknown 52.7
Inferior colliculus
nTPM: 65.6
2097 Female, age 72, unknown 71.7
1848 Female, age 42, unknown 64.6
1890 Male, age 53, unknown 63.3
2849 Male, age 72, unknown 62.8
Median raphe nucleus
nTPM: 62.6
2220 Male, age 76, midline 62.6
Periaquaductal grey, anterior
nTPM: 65.2
2502 Female, age 75, unknown 73.6
1947 Male, age 18, unknown 66.4
1795 Male, age 51, unknown 55.6
Periaquaductal grey, dorsal
nTPM: 57.9
2464 Female, age 72, unknown 62.8
1831 Male, age 72, unknown 61.2
2850 Male, age 76, both hemispheres 55.5
1840 Male, age 53, unknown 51.9
Periaquaductal grey, lateral
nTPM: 54.6
2272 Male, age 74, both hemispheres 56.4
2053 Male, age 18, unknown 54.6
2140 Male, age 76, both hemispheres 52.9
Pretectal area
nTPM: 70.6
1817 Female, age 42, unknown 82.1
2007 Male, age 72, unknown 81.2
1815 Male, age 53, unknown 81.1
2667 Female, age 75, unknown 75.8
2316 Male, age 76, right hemisphere 73.6
1816 Male, age 51, unknown 70.5
1944 Female, age 72, unknown 67.4
2224 Female, age 72, unknown 65.8
2825 Male, age 18, unknown 60.6
2273 Male, age 74, both hemispheres 60.2
2407 Male, age 75, both hemispheres 58.0
Red nucleus
nTPM: 84.0
1821 Female, age 72, unknown 105.2
1904 Male, age 53, unknown 95.0
2503 Female, age 72, unknown 91.2
2785 Male, age 18, unknown 90.1
1954 Female, age 42, unknown 89.0
1865 Male, age 51, unknown 88.1
2823 Male, age 76, right hemisphere 83.7
2227 Male, age 72, unknown 83.3
2769 Male, age 72, unknown 82.4
2588 Male, age 74, left hemisphere 72.3
2725 Female, age 75, unknown 69.6
2584 Male, age 75, left hemisphere 58.6
Substantia nigra
nTPM: 66.0
1889 Female, age 72, unknown 80.8
1851 Male, age 51, unknown 70.5
2409 Female, age 72, unknown 68.1
1941 Male, age 53, unknown 67.1
2699 Male, age 18, unknown 65.3
2590 Female, age 75, unknown 65.1
1916 Female, age 42, unknown 63.1
2241 Male, age 72, unknown 63.0
2583 Male, age 75, right hemisphere 60.0
2665 Male, age 74, both hemispheres 57.2
Superior colliculus
nTPM: 69.6
1913 Female, age 42, unknown 82.3
1895 Male, age 76, right hemisphere 80.9
1995 Male, age 72, unknown 79.7
2587 Male, age 74, left hemisphere 75.0
1839 Male, age 51, unknown 68.2
2668 Female, age 75, unknown 67.6
1796 Male, age 53, unknown 66.4
2087 Female, age 72, unknown 64.0
2261 Male, age 18, unknown 62.4
2664 Male, age 75, both hemispheres 49.0
Ventral tegmental area
nTPM: 65.8
2410 Female, age 72, unknown 72.7
2223 Female, age 72, unknown 69.0
1915 Female, age 42, unknown 65.3
1942 Male, age 51, unknown 64.7
2218 Male, age 76, both hemispheres 64.3
2021 Male, age 53, unknown 58.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 57.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.4
Samples: 183

Max nTPM: 100.2
Min nTPM: 28.6
Std nTPM: 12.9
Median nTPM: 55.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 100.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 95.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 94.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 93.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 93.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 92.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 86.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 85.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 84.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 82.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 81.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 200.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 200.1
FF:10158-103A5 76 years, female 200.1

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 49.2
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 46.2
Samples: 1

Max nTPM: 46.2
Min nTPM: 46.2
Sample A 46.2
Midbrain
nTPM: 42.6
Samples: 1

Max nTPM: 42.6
Min nTPM: 42.6
Sample A 42.6
Superior colliculi
nTPM: 49.2
Samples: 1

Max nTPM: 49.2
Min nTPM: 49.2
Sample A 49.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 91.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 85.2
Samples: 3

Max nTPM: 88.8
Min nTPM: 80.3
Sample A Female 88.8
Sample B Female 86.5
Sample C Male 80.3
Midbrain
nTPM: 77.2
Samples: 3

Max nTPM: 83.2
Min nTPM: 68.2
Sample B Female 68.2
Sample C Male 80.3
Sample D Male 83.2
Periaqueductal gray
nTPM: 67.0
Samples: 3

Max nTPM: 76.2
Min nTPM: 59.8
Sample B Female 64.9
Sample C Male 76.2
Sample D Male 59.8
Superior colliculi
nTPM: 91.6
Samples: 4

Max nTPM: 100.2
Min nTPM: 81.1
Sample A Female 97.2
Sample B Female 100.2
Sample C Male 87.8
Sample D Male 81.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.5
Samples: 4

Max nTPM: 26.3
Min nTPM: 24.7
Sample A 26.3
Sample B 26.2
Sample C 24.8
Sample D 24.7

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 38.1
Rat sample Sample description nTPM
Midbrain
nTPM: 38.1
Samples: 4

Max nTPM: 41.0
Min nTPM: 35.5
Sample A 41.0
Sample A 35.5
Sample A 37.9
Sample A 37.9

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