BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3175.7 nTPM
HPA Brain:2361.7 nTPM
GTEx:3175.7 nTPM
FANTOM5:1228.9 Scaled Tags Per Million
Macaque:571.3 nTPM
Mouse:2061.0 nTPM
Rat:1432.4 nTPM
Pig:2723.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 2361.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1614.3
2019 Male, age 18, unknown 1836.7
2411 Female, age 72, unknown 1731.9
2586 Male, age 75, left hemisphere 1693.3
1827 Male, age 72, unknown 1693.2
2828 Female, age 72, unknown 1691.2
2666 Male, age 74, left hemisphere 1615.5
1870 Female, age 42, unknown 1555.9
1833 Male, age 53, unknown 1545.7
2219 Male, age 76, both hemispheres 1390.8
1830 Male, age 51, unknown 1388.5
Dorsal raphe nucleus
nTPM: 1796.8
2298 Female, age 72, unknown 2095.6
2047 Male, age 72, unknown 1885.8
1828 Male, age 53, unknown 1848.0
2750 Male, age 76, both hemispheres 1751.4
2016 Female, age 72, unknown 1403.0
Inferior colliculus
nTPM: 1689.7
2097 Female, age 72, unknown 1952.6
1890 Male, age 53, unknown 1834.0
1848 Female, age 42, unknown 1547.7
2849 Male, age 72, unknown 1424.3
Median raphe nucleus
nTPM: 2361.7
2220 Male, age 76, midline 2361.7
Periaquaductal grey, anterior
nTPM: 1707.4
1795 Male, age 51, unknown 1723.9
1947 Male, age 18, unknown 1716.0
2502 Female, age 75, unknown 1682.4
Periaquaductal grey, dorsal
nTPM: 1369.6
1831 Male, age 72, unknown 1443.7
2850 Male, age 76, both hemispheres 1440.8
1840 Male, age 53, unknown 1346.0
2464 Female, age 72, unknown 1247.9
Periaquaductal grey, lateral
nTPM: 1368.9
2272 Male, age 74, both hemispheres 1499.2
2053 Male, age 18, unknown 1352.6
2140 Male, age 76, both hemispheres 1255.0
Pretectal area
nTPM: 1813.9
1817 Female, age 42, unknown 2334.0
1944 Female, age 72, unknown 2281.4
2007 Male, age 72, unknown 2157.1
1816 Male, age 51, unknown 2149.1
2667 Female, age 75, unknown 1938.3
1815 Male, age 53, unknown 1866.1
2273 Male, age 74, both hemispheres 1624.9
2224 Female, age 72, unknown 1577.4
2407 Male, age 75, both hemispheres 1443.0
2825 Male, age 18, unknown 1376.8
2316 Male, age 76, right hemisphere 1204.9
Red nucleus
nTPM: 1735.0
1821 Female, age 72, unknown 2120.0
1865 Male, age 51, unknown 1855.4
2785 Male, age 18, unknown 1834.6
1954 Female, age 42, unknown 1832.6
2725 Female, age 75, unknown 1829.2
2823 Male, age 76, right hemisphere 1734.2
2503 Female, age 72, unknown 1723.3
2769 Male, age 72, unknown 1718.4
1904 Male, age 53, unknown 1698.3
2227 Male, age 72, unknown 1661.8
2588 Male, age 74, left hemisphere 1452.0
2584 Male, age 75, left hemisphere 1360.7
Substantia nigra
nTPM: 2205.8
1916 Female, age 42, unknown 3335.0
1851 Male, age 51, unknown 2537.7
1941 Male, age 53, unknown 2330.7
1889 Female, age 72, unknown 2299.5
2241 Male, age 72, unknown 2253.3
2699 Male, age 18, unknown 2193.5
2665 Male, age 74, both hemispheres 1997.6
2409 Female, age 72, unknown 1988.6
2590 Female, age 75, unknown 1573.3
2583 Male, age 75, right hemisphere 1548.4
Superior colliculus
nTPM: 1607.3
2087 Female, age 72, unknown 2001.2
2668 Female, age 75, unknown 1909.5
1796 Male, age 53, unknown 1759.8
2261 Male, age 18, unknown 1665.9
2587 Male, age 74, left hemisphere 1644.5
2664 Male, age 75, both hemispheres 1596.6
1913 Female, age 42, unknown 1525.9
1895 Male, age 76, right hemisphere 1345.1
1839 Male, age 51, unknown 1320.5
1995 Male, age 72, unknown 1304.2
Ventral tegmental area
nTPM: 2008.7
1915 Female, age 42, unknown 2425.7
2410 Female, age 72, unknown 2347.6
2218 Male, age 76, both hemispheres 2210.6
2223 Female, age 72, unknown 1797.8
1942 Male, age 51, unknown 1782.7
2021 Male, age 53, unknown 1487.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3175.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3175.7
Samples: 183

Max nTPM: 6840.7
Min nTPM: 1720.5
Std nTPM: 769.8
Median nTPM: 3025.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 6840.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 6235.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 5209.7
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 5202.0
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 5097.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 4769.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 4684.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 4649.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 4623.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 4527.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 4350.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1228.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1228.9
FF:10158-103A5 76 years, female 1228.9

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 571.3
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 488.0
Samples: 1

Max nTPM: 488.0
Min nTPM: 488.0
Sample A 488.0
Midbrain
nTPM: 449.9
Samples: 1

Max nTPM: 449.9
Min nTPM: 449.9
Sample A 449.9
Superior colliculi
nTPM: 571.3
Samples: 1

Max nTPM: 571.3
Min nTPM: 571.3
Sample A 571.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 2723.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2509.1
Samples: 3

Max nTPM: 3178.9
Min nTPM: 1801.5
Sample A Female 3178.9
Sample B Female 1801.5
Sample C Male 2547.0
Midbrain
nTPM: 2444.4
Samples: 3

Max nTPM: 2826.6
Min nTPM: 2122.4
Sample B Female 2122.4
Sample C Male 2826.6
Sample D Male 2384.3
Periaqueductal gray
nTPM: 1787.2
Samples: 3

Max nTPM: 1948.7
Min nTPM: 1465.9
Sample B Female 1947.0
Sample C Male 1948.7
Sample D Male 1465.9
Superior colliculi
nTPM: 2723.5
Samples: 4

Max nTPM: 3274.9
Min nTPM: 2043.8
Sample A Female 3274.9
Sample B Female 2043.8
Sample C Male 3182.3
Sample D Male 2392.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2061.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 2061.0
Samples: 4

Max nTPM: 2149.5
Min nTPM: 1973.3
Sample A 2149.5
Sample B 1973.3
Sample C 2085.6
Sample D 2035.4

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 1432.4
Rat sample Sample description nTPM
Midbrain
nTPM: 1432.4
Samples: 4

Max nTPM: 1479.2
Min nTPM: 1310.9
Sample A 1470.1
Sample A 1469.2
Sample A 1479.2
Sample A 1310.9

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