We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ATN1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ATN1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:98.7 nTPM
HPA Brain:222.8 nTPM
GTEx:98.7 nTPM
FANTOM5:192.7 Scaled Tags Per Million
Pig:131.2 nTPM
Mouse:47.2 nTPM
Allen mouse:16.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

222.8
Sample id Sample description nTPM
Amygdala
nTPM: 187.1
2695 Female, age 67, right hemisphere 243.3
2814 Male, age 76, right hemisphere 191.8
2517 Female, age 94, left hemisphere 181.5
2514 Male, age 75, right hemisphere 159.9
1987 Female, age 91, left hemisphere 158.9
Basal amygdala
nTPM: 213.8
2827 Female, age 67, right hemisphere 236.9
2685 Female, age 94, left hemisphere 235.3
2609 Male, age 75, right hemisphere 233.7
2243 Female, age 91, right hemisphere 220.3
1955 Male, age 76, both hemispheres 186.5
2110 Male, age 80, left hemisphere 170.1
Central amygdala
nTPM: 222.8
2826 Female, age 94, left hemisphere 260.2
2515 Male, age 75, right hemisphere 230.6
2701 Female, age 91, right hemisphere 226.1
2239 Male, age 80, left hemisphere 217.1
1905 Male, age 76, both hemispheres 179.8
Corticomedial amygdala
nTPM: 193.6
2535 Female, age 67, right hemisphere 246.5
2242 Female, age 91, right hemisphere 203.9
2829 Male, age 80, left hemisphere 200.5
2240 Male, age 76, both hemispheres 188.1
2429 Female, age 94, left hemisphere 161.4
2428 Male, age 75, right hemisphere 161.3
Lateral amygdala
nTPM: 204.9
2256 Male, age 80, left hemisphere 246.1
2255 Female, age 91, right hemisphere 228.1
2534 Female, age 94, left hemisphere 203.1
2830 Female, age 67, right hemisphere 198.8
2516 Male, age 75, right hemisphere 188.7
1883 Male, age 76, both hemispheres 164.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 98.7
Samples: 181

Max nTPM: 241.1
Min nTPM: 46.7
Std nTPM: 21.9
Median nTPM: 96.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 241.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 168.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 154.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 152.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 150.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 143.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 143.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 140.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 137.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 136.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 134.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 133.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 128.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 126.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 123.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 121.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 121.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 121.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 120.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 120.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 119.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 118.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 117.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 117.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 117.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 117.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 116.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 115.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 115.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 113.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 113.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 112.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 112.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 112.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 112.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 112.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 111.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 111.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 110.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 110.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 110.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 109.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 108.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 108.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 108.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 108.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 108.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 107.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 107.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 106.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 106.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 106.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 105.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 105.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 104.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 104.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 104.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 104.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 104.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 103.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 103.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 103.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 102.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 102.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 102.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 102.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 102.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 101.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 101.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 101.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 101.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 101.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 101.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 100.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 100.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 100.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 99.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 99.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 99.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 99.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 99.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 99.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 99.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 99.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 98.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 97.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 97.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 97.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 97.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 96.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 96.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 95.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 95.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 95.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 95.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 95.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 95.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 95.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 94.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 94.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 94.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 94.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 94.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 94.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 94.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 93.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 93.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 93.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 92.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 92.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 91.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 91.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 91.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 91.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 90.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 90.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 90.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 90.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 90.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 89.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 89.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 89.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 89.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 89.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 89.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 89.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 88.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 88.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 88.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 88.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 88.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 87.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 87.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 87.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 87.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 86.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 86.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 86.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 85.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 85.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 84.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 84.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 83.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 83.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 83.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 83.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 83.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 82.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 82.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 80.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 80.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 80.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 80.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 79.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 79.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 79.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 79.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 79.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 78.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 77.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 77.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 76.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 75.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 74.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 74.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 73.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 71.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 71.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 70.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 69.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 69.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 68.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 67.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 67.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 66.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 66.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 63.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 62.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 59.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 53.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 46.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

192.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 192.7
FF:10151-102I7 76 years, female 192.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.2
Pig sample Sample description nTPM
Amygdala
nTPM: 131.2
Samples: 4

Max nTPM: 173.6
Min nTPM: 99.4
Sample A Female 173.6
Sample B Female 99.4
Sample C Male 120.7
Sample D Male 131.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 47.2
Samples: 4

Max nTPM: 52.6
Min nTPM: 42.0
Sample A Male 52.6
Sample B Male 43.0
Sample C Female 51.3
Sample D Female 42.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.7
68911027 Antisense, RP_050203_02_G07, Mouse strain C57BL/6J (56 days, male) 16.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo