BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:317.8 nTPM
HPA Brain:365.2 nTPM
GTEx:317.8 nTPM
FANTOM5:724.3 Scaled Tags Per Million
Macaque:377.3 nTPM
Mouse:299.3 nTPM
Pig:371.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 365.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 306.1
2411 Female, age 72, unknown 368.9
1827 Male, age 72, unknown 355.8
1870 Female, age 42, unknown 355.3
2019 Male, age 18, unknown 307.6
2666 Male, age 74, left hemisphere 294.1
1833 Male, age 53, unknown 293.9
2828 Female, age 72, unknown 292.2
1830 Male, age 51, unknown 283.1
2586 Male, age 75, left hemisphere 259.1
2219 Male, age 76, both hemispheres 250.9
Dorsal raphe nucleus
nTPM: 319.1
2298 Female, age 72, unknown 372.8
2750 Male, age 76, both hemispheres 327.6
2047 Male, age 72, unknown 306.3
1828 Male, age 53, unknown 303.5
2016 Female, age 72, unknown 285.1
Inferior colliculus
nTPM: 307.0
2097 Female, age 72, unknown 365.9
1848 Female, age 42, unknown 308.2
1890 Male, age 53, unknown 283.1
2849 Male, age 72, unknown 270.9
Median raphe nucleus
nTPM: 334.1
2220 Male, age 76, midline 334.1
Periaquaductal grey, anterior
nTPM: 342.0
1947 Male, age 18, unknown 374.9
2502 Female, age 75, unknown 352.3
1795 Male, age 51, unknown 298.8
Periaquaductal grey, dorsal
nTPM: 285.1
1840 Male, age 53, unknown 297.4
2464 Female, age 72, unknown 290.3
1831 Male, age 72, unknown 289.9
2850 Male, age 76, both hemispheres 262.8
Periaquaductal grey, lateral
nTPM: 266.5
2053 Male, age 18, unknown 301.0
2272 Male, age 74, both hemispheres 262.8
2140 Male, age 76, both hemispheres 235.8
Pretectal area
nTPM: 337.5
1816 Male, age 51, unknown 404.4
2007 Male, age 72, unknown 386.2
1815 Male, age 53, unknown 365.9
1944 Female, age 72, unknown 363.9
1817 Female, age 42, unknown 361.9
2224 Female, age 72, unknown 333.2
2667 Female, age 75, unknown 326.8
2273 Male, age 74, both hemispheres 317.5
2825 Male, age 18, unknown 299.7
2407 Male, age 75, both hemispheres 291.0
2316 Male, age 76, right hemisphere 261.8
Red nucleus
nTPM: 310.7
1821 Female, age 72, unknown 408.9
2503 Female, age 72, unknown 339.2
1954 Female, age 42, unknown 322.8
1865 Male, age 51, unknown 318.3
1904 Male, age 53, unknown 313.3
2725 Female, age 75, unknown 299.8
2785 Male, age 18, unknown 293.8
2227 Male, age 72, unknown 291.9
2769 Male, age 72, unknown 291.1
2584 Male, age 75, left hemisphere 284.2
2588 Male, age 74, left hemisphere 283.9
2823 Male, age 76, right hemisphere 281.5
Substantia nigra
nTPM: 365.2
2241 Male, age 72, unknown 420.5
1941 Male, age 53, unknown 413.5
1889 Female, age 72, unknown 392.4
1916 Female, age 42, unknown 388.7
1851 Male, age 51, unknown 385.0
2409 Female, age 72, unknown 380.6
2665 Male, age 74, both hemispheres 342.4
2590 Female, age 75, unknown 324.2
2583 Male, age 75, right hemisphere 309.3
2699 Male, age 18, unknown 295.3
Superior colliculus
nTPM: 314.9
2668 Female, age 75, unknown 357.7
2261 Male, age 18, unknown 357.0
2587 Male, age 74, left hemisphere 347.5
2087 Female, age 72, unknown 345.6
1796 Male, age 53, unknown 313.0
1913 Female, age 42, unknown 306.7
1839 Male, age 51, unknown 294.9
1895 Male, age 76, right hemisphere 289.2
2664 Male, age 75, both hemispheres 280.0
1995 Male, age 72, unknown 257.7
Ventral tegmental area
nTPM: 341.9
2410 Female, age 72, unknown 384.1
2223 Female, age 72, unknown 362.1
1915 Female, age 42, unknown 344.8
1942 Male, age 51, unknown 335.0
2218 Male, age 76, both hemispheres 324.1
2021 Male, age 53, unknown 301.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 317.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 317.8
Samples: 183

Max nTPM: 746.0
Min nTPM: 137.3
Std nTPM: 87.7
Median nTPM: 299.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 746.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 633.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 633.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 589.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 555.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 483.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 482.9
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 475.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 465.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 461.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 448.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 724.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 724.3
FF:10158-103A5 76 years, female 724.3

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 377.3
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 377.3
Samples: 1

Max nTPM: 377.3
Min nTPM: 377.3
Sample A 377.3
Midbrain
nTPM: 269.4
Samples: 1

Max nTPM: 269.4
Min nTPM: 269.4
Sample A 269.4
Superior colliculi
nTPM: 287.4
Samples: 1

Max nTPM: 287.4
Min nTPM: 287.4
Sample A 287.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 371.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 371.6
Samples: 3

Max nTPM: 452.3
Min nTPM: 318.6
Sample A Female 452.3
Sample B Female 318.6
Sample C Male 344.0
Midbrain
nTPM: 337.4
Samples: 3

Max nTPM: 365.1
Min nTPM: 284.6
Sample B Female 365.1
Sample C Male 362.4
Sample D Male 284.6
Periaqueductal gray
nTPM: 265.2
Samples: 3

Max nTPM: 279.6
Min nTPM: 239.5
Sample B Female 279.6
Sample C Male 276.5
Sample D Male 239.5
Superior colliculi
nTPM: 340.2
Samples: 4

Max nTPM: 394.3
Min nTPM: 298.3
Sample A Female 364.8
Sample B Female 303.5
Sample C Male 394.3
Sample D Male 298.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 299.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 299.3
Samples: 4

Max nTPM: 316.2
Min nTPM: 273.3
Sample A 294.9
Sample B 273.3
Sample C 316.2
Sample D 312.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo