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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:223.0 nTPM
HPA Brain:135.7 nTPM
GTEx:223.0 nTPM
FANTOM5:204.0 Scaled Tags Per Million
Pig:165.9 nTPM
Mouse:177.7 nTPM
Allen mouse:21.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.7
Sample id Sample description nTPM
Amygdala
nTPM: 135.7
2814 Male, age 76, right hemisphere 199.5
2514 Male, age 75, right hemisphere 140.0
1987 Female, age 91, left hemisphere 128.9
2695 Female, age 67, right hemisphere 111.8
2517 Female, age 94, left hemisphere 98.2
Basal amygdala
nTPM: 101.4
1955 Male, age 76, both hemispheres 141.6
2609 Male, age 75, right hemisphere 116.7
2110 Male, age 80, left hemisphere 108.1
2243 Female, age 91, right hemisphere 103.4
2685 Female, age 94, left hemisphere 82.2
2827 Female, age 67, right hemisphere 56.4
Central amygdala
nTPM: 112.1
1905 Male, age 76, both hemispheres 159.7
2515 Male, age 75, right hemisphere 117.6
2239 Male, age 80, left hemisphere 104.2
2701 Female, age 91, right hemisphere 96.9
2826 Female, age 94, left hemisphere 82.0
Corticomedial amygdala
nTPM: 112.6
2240 Male, age 76, both hemispheres 140.4
2428 Male, age 75, right hemisphere 131.5
2829 Male, age 80, left hemisphere 122.5
2242 Female, age 91, right hemisphere 111.9
2429 Female, age 94, left hemisphere 107.1
2535 Female, age 67, right hemisphere 62.4
Lateral amygdala
nTPM: 95.4
1883 Male, age 76, both hemispheres 151.8
2516 Male, age 75, right hemisphere 111.1
2534 Female, age 94, left hemisphere 86.6
2256 Male, age 80, left hemisphere 82.6
2255 Female, age 91, right hemisphere 72.7
2830 Female, age 67, right hemisphere 68.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

223.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 223.0
Samples: 181

Max nTPM: 544.0
Min nTPM: 139.4
Std nTPM: 59.2
Median nTPM: 208.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 544.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 469.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 417.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 414.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 389.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 378.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 377.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 354.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 348.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 332.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 319.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 317.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 314.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 311.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 306.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 304.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 303.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 294.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 290.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 286.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 283.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 283.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 282.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 279.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 278.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 275.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 273.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 269.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 267.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 263.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 259.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 258.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 258.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 257.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 256.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 249.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 249.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 248.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 246.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 246.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 245.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 243.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 243.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 242.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 240.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 239.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 238.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 238.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 237.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 237.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 237.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 237.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 234.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 234.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 233.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 231.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 229.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 228.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 227.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 227.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 224.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 224.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 223.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 223.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 222.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 221.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 220.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 220.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 220.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 220.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 219.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 219.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 219.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 218.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 218.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 217.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 217.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 216.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 215.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 215.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 214.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 214.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 212.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 212.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 211.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 211.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 210.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 210.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 209.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 209.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 208.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 208.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 207.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 207.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 207.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 207.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 207.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 206.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 206.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 206.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 205.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 204.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 204.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 203.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 203.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 202.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 202.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 201.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 201.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 199.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 199.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 199.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 198.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 198.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 198.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 197.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 197.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 196.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 196.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 195.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 194.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 194.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 193.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 192.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 192.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 191.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 190.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 190.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 189.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 189.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 187.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 187.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 187.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 186.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 186.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 185.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 185.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 185.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 183.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 182.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 182.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 181.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 180.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 180.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 180.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 180.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 179.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 179.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 179.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 178.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 177.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 177.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 177.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 176.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 175.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 175.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 175.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 171.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 171.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 171.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 170.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 169.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 169.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 168.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 168.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 167.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 167.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 166.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 166.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 165.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 164.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 159.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 158.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 153.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 152.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 151.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 149.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 146.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 144.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 141.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 139.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

204.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 204.0
FF:10151-102I7 76 years, female 204.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.9
Pig sample Sample description nTPM
Amygdala
nTPM: 166.0
Samples: 4

Max nTPM: 205.1
Min nTPM: 140.5
Sample A Female 205.1
Sample B Female 170.5
Sample C Male 147.7
Sample D Male 140.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

177.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 177.7
Samples: 4

Max nTPM: 190.5
Min nTPM: 163.0
Sample A Male 163.0
Sample B Male 175.2
Sample C Female 190.5
Sample D Female 182.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.0
69885624 Antisense, RP_050512_03_A07, Mouse strain C57BL/6J (56 days, male) 21.0

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