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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:198.9 nTPM
HPA Brain:143.3 nTPM
GTEx:198.9 nTPM
FANTOM5:170.1 Scaled Tags Per Million
Pig:200.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 110.1
1981 Female, age 72, midline 144.2
2048 Male, age 55, midline 120.3
2194 Female, age 79, both hemispheres 99.4
2565 Male, age 75, midline 98.2
2816 Male, age 47, midline 88.5
Cervical spinal cord, dorsal horn
nTPM: 143.3
2296 Male, age 66, both hemispheres 172.6
2069 Male, age 47, both hemispheres 159.7
2173 Female, age 72, unknown 156.6
1877 Male, age 55, unknown 132.1
2297 Male, age 75, both hemispheres 126.0
2721 Male, age 90, both hemispheres 112.6
Cervical spinal cord, ventral horn
nTPM: 125.8
2098 Female, age 72, unknown 172.6
2480 Male, age 75, both hemispheres 144.4
2809 Male, age 90, both hemispheres 133.4
2295 Male, age 66, both hemispheres 118.8
2068 Male, age 55, unknown 102.8
2820 Female, age 79, both hemispheres 83.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

198.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 198.9
Samples: 204

Max nTPM: 548.6
Min nTPM: 119.1
Std nTPM: 48.6
Median nTPM: 190.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 548.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 422.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 347.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 340.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 330.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 320.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 317.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 302.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 296.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 293.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 266.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 265.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 264.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 263.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 263.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 259.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 257.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 257.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 250.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 248.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 247.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 246.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 243.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 242.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 241.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 241.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 239.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 238.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 236.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 233.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 230.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 226.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 226.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 226.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 226.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 224.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 222.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 221.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 220.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 220.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 219.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 218.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 218.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 218.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 217.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 216.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 216.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 215.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 215.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 215.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 215.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 214.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 213.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 213.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 212.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 212.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 211.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 211.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 211.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 210.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 209.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 209.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 207.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 207.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 207.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 207.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 206.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 206.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 206.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 204.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 204.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 203.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 203.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 202.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 202.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 202.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 202.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 201.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 201.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 201.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 199.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 199.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 199.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 199.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 198.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 198.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 198.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 198.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 197.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 197.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 196.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 195.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 194.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 194.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 192.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 192.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 192.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 192.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 192.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 191.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 191.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 191.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 190.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 190.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 190.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 189.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 189.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 189.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 188.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 188.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 188.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 187.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 187.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 187.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 187.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 186.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 185.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 185.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 184.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 184.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 184.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 183.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 183.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 183.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 181.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 179.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 179.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 179.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 179.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 178.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 178.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 178.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 178.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 178.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 177.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 177.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 177.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 177.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 175.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 174.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 173.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 173.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 173.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 172.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 172.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 171.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 171.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 171.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 169.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 169.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 168.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 168.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 166.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 166.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 166.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 166.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 166.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 166.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 165.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 165.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 164.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 164.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 164.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 163.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 162.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 162.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 162.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 161.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 161.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 161.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 161.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 161.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 161.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 160.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 160.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 160.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 159.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 159.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 158.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 158.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 158.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 158.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 157.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 156.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 155.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 155.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 154.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 154.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 153.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 152.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 152.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 151.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 150.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 148.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 147.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 144.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 144.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 139.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 136.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 136.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 134.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 131.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 124.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 119.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

170.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 170.1
FF:10181-103D1 60 years, female 181.0
FF:10159-103A6 76 years, female 159.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 179.5
Samples: 4

Max nTPM: 193.9
Min nTPM: 169.7
Sample A Female 171.1
Sample B Female 193.9
Sample C Male 183.1
Sample D Male 169.7
Ventral spinal cord
nTPM: 200.0
Samples: 4

Max nTPM: 211.1
Min nTPM: 183.0
Sample A Female 183.0
Sample B Female 208.9
Sample C Male 197.1
Sample D Male 211.1

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