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  • DNPH1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:99.0 nTPM
HPA Brain:34.8 nTPM
GTEx:99.0 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Pig:10.3 nTPM
Mouse:5.0 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.8
Sample id Sample description nTPM
Amygdala
nTPM: 34.8
2517 Female, age 94, left hemisphere 39.6
1987 Female, age 91, left hemisphere 39.4
2695 Female, age 67, right hemisphere 38.5
2514 Male, age 75, right hemisphere 30.8
2814 Male, age 76, right hemisphere 25.5
Basal amygdala
nTPM: 30.7
2609 Male, age 75, right hemisphere 36.0
2110 Male, age 80, left hemisphere 32.2
2243 Female, age 91, right hemisphere 30.1
1955 Male, age 76, both hemispheres 29.0
2685 Female, age 94, left hemisphere 28.8
2827 Female, age 67, right hemisphere 27.9
Central amygdala
nTPM: 31.9
2826 Female, age 94, left hemisphere 43.9
2515 Male, age 75, right hemisphere 33.4
2701 Female, age 91, right hemisphere 29.7
2239 Male, age 80, left hemisphere 28.2
1905 Male, age 76, both hemispheres 24.3
Corticomedial amygdala
nTPM: 27.8
2829 Male, age 80, left hemisphere 35.4
2242 Female, age 91, right hemisphere 29.4
2429 Female, age 94, left hemisphere 28.0
2428 Male, age 75, right hemisphere 27.5
2535 Female, age 67, right hemisphere 23.6
2240 Male, age 76, both hemispheres 23.2
Lateral amygdala
nTPM: 29.8
2516 Male, age 75, right hemisphere 35.6
2534 Female, age 94, left hemisphere 32.9
2255 Female, age 91, right hemisphere 30.2
2256 Male, age 80, left hemisphere 28.2
2830 Female, age 67, right hemisphere 26.2
1883 Male, age 76, both hemispheres 25.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 99.0
Samples: 181

Max nTPM: 268.2
Min nTPM: 41.5
Std nTPM: 30.8
Median nTPM: 96.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 268.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 225.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 206.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 196.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 194.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 175.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 165.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 159.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 158.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 146.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 142.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 141.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 141.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 138.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 138.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 138.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 135.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 135.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 133.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 133.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 128.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 127.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 124.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 122.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 122.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 120.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 120.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 119.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 118.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 117.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 117.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 116.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 116.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 115.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 113.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 113.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 112.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 112.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 112.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 112.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 111.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 111.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 110.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 109.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 109.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 109.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 109.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 109.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 108.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 108.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 106.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 106.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 106.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 106.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 105.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 105.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 104.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 104.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 104.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 104.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 104.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 103.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 102.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 102.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 102.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 102.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 101.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 101.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 101.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 100.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 100.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 100.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 99.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 99.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 99.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 99.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 99.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 98.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 98.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 98.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 98.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 98.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 97.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 97.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 97.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 97.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 97.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 97.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 97.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 97.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 96.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 95.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 95.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 95.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 94.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 93.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 93.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 93.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 93.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 93.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 93.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 93.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 92.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 91.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 91.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 91.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 91.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 90.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 90.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 90.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 89.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 89.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 89.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 88.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 88.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 88.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 88.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 88.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 87.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 87.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 87.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 86.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 86.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 86.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 85.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 84.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 84.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 84.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 84.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 84.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 83.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 82.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 81.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 81.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 81.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 80.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 80.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 79.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 79.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 78.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 78.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 78.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 77.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 77.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 75.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 75.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 75.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 74.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 74.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 74.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 73.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 73.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 73.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 71.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 70.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 70.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 70.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 70.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 69.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 69.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 67.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 67.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 67.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 66.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 66.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 65.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 65.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 63.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 63.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 63.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 61.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 61.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 60.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 58.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 57.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 56.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 53.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 52.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 51.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 50.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 41.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 26.7
FF:10151-102I7 76 years, female 26.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.3
Pig sample Sample description nTPM
Amygdala
nTPM: 10.3
Samples: 4

Max nTPM: 11.8
Min nTPM: 7.6
Sample A Female 11.8
Sample B Female 10.2
Sample C Male 11.5
Sample D Male 7.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 5.0
Samples: 4

Max nTPM: 6.0
Min nTPM: 4.4
Sample A Male 6.0
Sample B Male 4.4
Sample C Female 4.7
Sample D Female 4.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.2
69262317 Antisense, RP_050303_01_H09, Mouse strain C57BL/6J (56 days, male) 0.2

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