MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.7 nTPM
HPA Brain:34.8 nTPM
GTEx:72.7 nTPM
FANTOM5:17.0 Scaled Tags Per Million
Pig:15.1 nTPM
Mouse:3.6 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.9
2586 Male, age 75, left hemisphere 36.8
2828 Female, age 72, unknown 33.4
1827 Male, age 72, unknown 27.8
1870 Female, age 42, unknown 26.8
2666 Male, age 74, left hemisphere 23.7
1830 Male, age 51, unknown 20.8
1833 Male, age 53, unknown 20.7
2219 Male, age 76, both hemispheres 20.1
2411 Female, age 72, unknown 19.6
2019 Male, age 18, unknown 19.3
Dorsal raphe nucleus
nTPM: 33.7
2298 Female, age 72, unknown 43.4
2016 Female, age 72, unknown 38.1
1828 Male, age 53, unknown 32.3
2047 Male, age 72, unknown 30.0
2750 Male, age 76, both hemispheres 24.5
Inferior colliculus
nTPM: 29.7
1890 Male, age 53, unknown 31.7
2097 Female, age 72, unknown 31.2
2849 Male, age 72, unknown 29.4
1848 Female, age 42, unknown 26.4
Median raphe nucleus
nTPM: 22.9
2220 Male, age 76, midline 22.9
Periaquaductal grey, anterior
nTPM: 30.8
1795 Male, age 51, unknown 37.0
2502 Female, age 75, unknown 30.9
1947 Male, age 18, unknown 24.5
Periaquaductal grey, dorsal
nTPM: 32.4
1840 Male, age 53, unknown 39.3
2850 Male, age 76, both hemispheres 36.6
1831 Male, age 72, unknown 30.9
2464 Female, age 72, unknown 22.9
Periaquaductal grey, lateral
nTPM: 34.8
2272 Male, age 74, both hemispheres 36.7
2053 Male, age 18, unknown 34.4
2140 Male, age 76, both hemispheres 33.2
Pretectal area
nTPM: 30.6
2273 Male, age 74, both hemispheres 45.0
2667 Female, age 75, unknown 36.5
2825 Male, age 18, unknown 35.2
2224 Female, age 72, unknown 34.8
2407 Male, age 75, both hemispheres 29.8
1816 Male, age 51, unknown 28.0
1815 Male, age 53, unknown 25.9
1944 Female, age 72, unknown 25.8
2007 Male, age 72, unknown 25.3
1817 Female, age 42, unknown 25.1
2316 Male, age 76, right hemisphere 24.9
Red nucleus
nTPM: 27.4
2503 Female, age 72, unknown 30.5
2725 Female, age 75, unknown 30.3
1821 Female, age 72, unknown 30.0
1954 Female, age 42, unknown 29.1
2227 Male, age 72, unknown 28.6
2769 Male, age 72, unknown 28.0
1904 Male, age 53, unknown 26.5
2584 Male, age 75, left hemisphere 26.5
1865 Male, age 51, unknown 25.5
2785 Male, age 18, unknown 25.5
2588 Male, age 74, left hemisphere 25.4
2823 Male, age 76, right hemisphere 23.4
Substantia nigra
nTPM: 28.8
2699 Male, age 18, unknown 39.8
1916 Female, age 42, unknown 37.3
1851 Male, age 51, unknown 32.4
2583 Male, age 75, right hemisphere 27.6
2241 Male, age 72, unknown 27.0
2665 Male, age 74, both hemispheres 26.3
2409 Female, age 72, unknown 26.1
1941 Male, age 53, unknown 25.6
1889 Female, age 72, unknown 24.3
2590 Female, age 75, unknown 21.4
Superior colliculus
nTPM: 28.5
1796 Male, age 53, unknown 33.7
1995 Male, age 72, unknown 32.7
2664 Male, age 75, both hemispheres 32.2
2587 Male, age 74, left hemisphere 29.8
2261 Male, age 18, unknown 28.9
1913 Female, age 42, unknown 28.2
2668 Female, age 75, unknown 27.3
2087 Female, age 72, unknown 26.1
1839 Male, age 51, unknown 25.2
1895 Male, age 76, right hemisphere 21.1
Ventral tegmental area
nTPM: 29.7
1915 Female, age 42, unknown 41.4
1942 Male, age 51, unknown 31.4
2021 Male, age 53, unknown 29.4
2223 Female, age 72, unknown 26.3
2410 Female, age 72, unknown 25.2
2218 Male, age 76, both hemispheres 24.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 72.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.7
Samples: 183

Max nTPM: 148.0
Min nTPM: 24.0
Std nTPM: 22.5
Median nTPM: 69.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 148.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 143.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 142.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 139.0
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 129.0
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 124.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 121.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 118.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 116.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 115.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 111.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 17.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.0
FF:10158-103A5 76 years, female 17.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 15.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.0
Samples: 4

Max nTPM: 18.6
Min nTPM: 12.3
Sample A Female 18.6
Sample B Female 12.3
Sample C Male 15.8
Sample D Male 13.3
Midbrain
nTPM: 15.1
Samples: 4

Max nTPM: 27.8
Min nTPM: 8.4
Sample A Female 27.8
Sample B Female 13.6
Sample C Male 8.4
Sample D Male 10.4
Periaqueductal gray
nTPM: 12.9
Samples: 3

Max nTPM: 15.5
Min nTPM: 10.6
Sample B Female 10.6
Sample C Male 15.5
Sample D Male 12.6
Superior colliculi
nTPM: 12.2
Samples: 4

Max nTPM: 15.3
Min nTPM: 10.4
Sample A Female 15.3
Sample B Female 12.1
Sample C Male 10.4
Sample D Male 11.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.6
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.3
Sample A Male 4.2
Sample B Male 3.4
Sample C Female 3.3
Sample D Female 3.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69262317 Antisense, RP_050303_01_H09, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo